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Supporting data and materials for "Large-scale analysis of evolutionary histories of phosphorylation motifs in the human genome".

Dataset type: Proteomic
Data released on April 09, 2015

Yoshizaki H; Okuda S (2015): Supporting data and materials for "Large-scale analysis of evolutionary histories of phosphorylation motifs in the human genome". GigaScience Database. https://doi.org/10.5524/100136

DOI10.5524/100136

Protein phosphorylation is a post-translational modification that is essential for a wide range of eukaryotic physiological processes, such as transcription, cytoskeletal regulation, cell metabolism, and signal transduction. In this study, we provide data for the assessments of functional phosphorylation signaling using comparative proteome analysis of phosphorylation motifs. Data for 93,101 phosphosites and 1,003,756 potential phosphosites are described and provide an overview of evolutionary patterns of phosphomotif acquisition and indicate dependence on motif structures. By using these data, we described interaction networks of phosphoproteins, identified kinase substrates associated with phosphoproteins, and performed gene ontology enrichment analyses.

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Additional details

Read the peer-reviewed publication(s):

  • Yoshizaki, H., & Okuda, S. (2015). Large-scale analysis of the evolutionary histories of phosphorylation motifs in the human genome. GigaScience, 4(1). https://doi.org/10.1186/s13742-015-0057-6

Additional information:

http://moana.dnsalias.org/~sgeib/Bcur_RNAseq_Trinity/

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Table Settings

File Name Description Sample ID Data Type File Format Size Release Date File Attributes Download
Readme TEXT 1.42 kB 2015-03-19 MD5 checksum: 04d35ddb2183942978aff413125fb9bc
93,101 known phosphosites in the human genome Tabular data EXCEL 2.73 MB 2015-03-19
1,003,756 potential phosphosites in the human genome Text TEXT 352.45 MB 2015-03-19 MD5 checksum: 45cb4971ec6aebcdc203842cd5337560
cytoscape interactions network of proteins with known phospho-motifs Other Cytoscape 6.92 MB 2015-03-19 MD5 checksum: adf2ce87d057aef2cd8a1016f9cd6aa6
Sequence logo images for phosphomotifs that were defined in the present study and bar plots for conservation of each phosphomotif. Image GZIP 51.08 MB 2015-01-30 MD5 checksum: ec686ba3ae224612bbd83599f50d0e27
Date Action
March 31, 2015 Additional file Images added
March 31, 2015 Additional file Images added
May 8, 2015 Manuscript Link added : 10.1186/s13742-015-0057-6