Molecular biology of the tobraviruses

References

1. Angenent G. C. 1989; Structure and expression of the tobacco rattle virus genome. PhD thesis University of Leiden; The Netherlands:
   [Google Scholar]
2. Angenent G. C., Linthorst H. J. M., van Belkum A. F., Cornelissen B. J. C., Bol J. F. 1986; RNA 2 of tobacco rattle virus strain TCM encodes an unexpected gene. Nucleic Acids Research 14:4673–4682
   [Google Scholar]
3. Angenent G. C., Verbeek H. B. M., Bol J. F. 1989a; Expression of the 16K cistron of tobacco rattle virus in protoplasts. Virology 169:305–311
   [Google Scholar]
4. Angenent G. C., Posthumus E., Brederode F. T., Bol J. F. 1989b; Genome structure of tobacco rattle virus strain PLB: further evidence on the occurrence of RNA recombination among tobraviruses. Virology 171:271–274
   [Google Scholar]
5. Angenent G. C., Posthumus E., Bol J. F. 1989c; Biological activity of transcripts synthesized in vitro from full-length and mutated DNA copies of tobacco rattle virus RNA 2. Virology 173:68–76
   [Google Scholar]
6. Angenent G. C., Van den Ouweland J. M. V., Bol J. F. 1990; Susceptibility to virus infection of transgenic tobacco plants expressing structural and nonstructural genes of tobacco rattle virus. Virology 175:191–198
   [Google Scholar]
7. Bergh S. T., Siegel A. 1989; Intraviral homology and subgenomic RNAs of pepper ringspot virus. Virology 168:339–343
   [Google Scholar]
8. Bergh S. T., Koziel M. G., Huang S.-C., Thomas R. A., Gilley D. P., Siegel A. 1985; The nucleotide sequence of tobacco rattle virus RNA-2 (CAM strain. Nucleic Acids Research 13:8507–8518
   [Google Scholar]
9. Boccara M., Hamilton W. D. O., Baulcombe D. C. 1986; The organization and interviral homologies of genes at the 3′ end of tobacco rattle virus RNA1. EMBO Journal 5:223–229
   [Google Scholar]
10. Boulton R. E. 1996; Pea early-browning tobravirus. Plant Pathology 45:13–28
    [Google Scholar]
11. Brierley K. M., Goodman B. A., Mayo M. A. 1993; A mobile element on a virus particle surface identified by nuclear magnetic resonance spectroscopy. Biochemical Journal 293:657–659
    [Google Scholar]
12. Cornelissen B. J. C., Linthorst H. J. M., Brederode F. T., Bol J. F. 1986; Analysis of the genome structure of tobacco rattle virus strain PSG. Nucleic Acids Research 14:2157–2169
    [Google Scholar]
13. Diao A., Chen J., Ye R., Zheng T., Yu S., Antoniw J. F., Adams M. J. 1999; Complete sequence and genome properties of Chinese wheat mosaic virus, a new furovirus from China. Journal of General Virology 80:1141–1145
    [Google Scholar]
14. Dolja V. V., Boyko V. P., Agranovsky A. A., Koonin E. V. 1991; Phylogeny of capsid proteins of rod-shaped and filamentous RNA plant viruses: two families with distinct patterns of sequence and probably structure conservation. Virology 184:79–86
    [Google Scholar]
15. Donald R. G., Jackson A. O. 1994; The barley stripe mosaic virus γb gene encodes a multifunctional cysteine-rich protein that affects pathogenesis. Plant Cell 6:1593–1606
    [Google Scholar]
16. Edwards M. C. 1995; Mapping of the seed transmission determinants of barley stripe mosaic virus. Molecular Plant Microbe Interactions 8:906–915
    [Google Scholar]
17. Ferguson D. H. 1999; Production of chimaeric genomes for the analysis of tobraviral symptom determinants. PhD thesis University of; Birmingham, UK:
    [Google Scholar]
18. Goulden M. G., Lomonossoff G. P., Davies J. W., Wood K. R. 1990; The complete nucleotide sequence of PEBV RNA2 reveals the presence of a novel open reading frame and provides insights into the structure of tobraviral subgenomic promoters. Nucleic Acids Research 18:4507–4512
    [Google Scholar]
19. Goulden M. G., Lomonossoff G. P., Wood K. R., Davies J. W. 1991; A model for the generation of tobacco rattle virus (TRV) anomalous isolates: pea early- browning virus RNA2 acquires TRV sequences from both RNA1 and RNA2. Journal of General Virology 72:1751–1754
    [Google Scholar]
20. Goulden M. G., Davies J. W., Wood K. R., Lomonossoff G. P. 1992; Structure of tobraviral particles: a model suggested from sequence conservation in tobraviral and tobamoviral coat proteins. Journal of Molecular Biology 227:1–8
    [Google Scholar]
21. Guilford P. J., Ziegler-Graff V., Baulcombe D. C. 1991; Mutation and replacement of the 16-kDa protein gene in RNA-1 of tobacco rattle virus. Virology 182:607–614
    [Google Scholar]
22. Hamilton W. D. O., Baulcombe D. C. 1989; Infectious RNA produced by in vitro transcription of a full-length tobacco rattle virus RNA-1 cDNA. Journal of General Virology 70:963–968
    [Google Scholar]
23. Hamilton W. D. O., Boccara M., Robinson D. J., Baulcombe D. C. 1987; The complete nucleotide sequence of tobacco rattle virus RNA-1. Journal of General Virology 68:2563–2575
    [Google Scholar]
24. Harrison B. D. 1973; Pea early- browning virus. CMI/AAB Descriptions of Plant Viruses, no. 120
    [Google Scholar]
25. Harrison B. D., Robinson D. J. 1978; The tobraviruses. Advances in Virus Research 23:25–77
    [Google Scholar]
26. Harrison B. D., Robinson D. J. 1986; Tobraviruses. In The Plant Viruses pp. 339–369 Edited by van Regenmortel M. H. V., Fraenkel-Conrat H. New York: Plenum Press;
    [Google Scholar]
27. Hehn A., Bouzoubaa S., Bate N., Twell D., Marbach J., Richards K., Guilley H., Jonard G. 1995; The small cysteine-rich protein P14 of beet necrotic yellow vein virus regulates accumulation of RNA 2 in cis and coat protein in trans. Virology 210:73–81
    [Google Scholar]
28. Hernández C., Mathis A., Brown D. J. F., Bol J. F. 1995; Sequence of RNA 2 of a nematode-transmissible isolate of tobacco rattle virus. Journal of General Virology 76:2847–2851
    [Google Scholar]
29. Hernández C., Carette J. E., Brown D. J. F., Bol J. F. 1996; Serial passage of tobacco rattle virus under different selection conditions results in deletion of structural and nonstructural genes in RNA 2. Journal of Virology 70:4933–4940
    [Google Scholar]
30. Hernández C., Visser P. B., Brown D. J. F., Bol J. F. 1997; Transmission of tobacco rattle virus isolate PpK20 by its nematode vector requires one of the two non-structural genes in the viral RNA 2. Journal of General Virology 78:465–467
    [Google Scholar]
31. Hughes G., Davies J. W., Wood K. R. 1986; In vitro translation of the bipartite genomic RNA of pea early browning virus. Journal of General Virology 67:2125–2133
    [Google Scholar]
32. Johnsen M. G., Rasmussen O. F., Albrechtsen M., Borkhardt B. 1991; In vivo expression of the 29000 M _r protein from RNA-2 of pea early browning tobravirus. Journal of General Virology 72:1223–1227
    [Google Scholar]
33. Koonin E. V. 1991; The phylogeny of RNA- dependent RNA polymerases of positive-strand RNA viruses. Journal of General Virology 72:2197–2206
    [Google Scholar]
34. Koonin E. V., Boyko V. P., Dolja V. V. 1991; Small cysteine-rich proteins of different groups of plant RNA viruses are related to different families of nucleic acid-binding proteins. Virology 181:395–398
    [Google Scholar]
35. Legorburu F. J., Robinson D. J., Torrance L. 1996; Features on the surface of the tobacco rattle tobravirus particle that are antigenic and sensitive to proteolytic digestion. Journal of General Virology 77:855–859
    [Google Scholar]
36. Liu D. H., Robinson D. J., Duncan G. H., Harrison B. D. 1991; Nuclear location of the 16K non-structural protein of tobacco rattle virus. Journal of General Virology 72:1811–1817
    [Google Scholar]
37. Lomonossoff G. P. 1995; Pathogen-derived resistance to plant viruses. Annual Review of Phytopathology 33:323–343
    [Google Scholar]
38. MacFarlane S. A. 1997; Natural recombination among plant virus genomes: evidence from tobraviruses. Seminars in Virology 8:25–31
    [Google Scholar]
39. MacFarlane S. A., Brown D. J. F. 1995; Sequence comparison of RNA2 of nematode-transmissible and nematode-non- transmissible isolates of pea early-browning virus suggests that the gene encoding the 29 kDa protein may be involved in nematode transmission. Journal of General Virology 76:1299–1304
    [Google Scholar]
40. MacFarlane S. A., Davies J. W. 1992; Plants transformed with a region of the 201-kilodalton replicase gene from pea early browning virus RNA1 are resistant to virus infection. Proceedings of the National Academy of Sciences USA 89:5829–5833
    [Google Scholar]
41. MacFarlane S. A., Taylor S. C., King D. I., Hughes G., Davies J. W. 1989; Pea early browning virus RNA1 encodes four polypeptides including a putative zinc-finger protein. Nucleic Acids Research 17:2245–2260
    [Google Scholar]
42. MacFarlane S. A., Wallis C. V., Taylor S. C., Goulden M. G., Wood K. R., Davies J. W. 1991; Construction and analysis of infectious transcripts synthesized from full-length cDNA clones of both genomic RNAs of pea early browning virus. Virology 182:124–129
    [Google Scholar]
43. MacFarlane S. A., Gilmer D., Davies J. W. 1992; Efficient inoculation with CaMV 35S promoter-driven DNA clones of the tobravirus PEBV. Virology 187:829–831
    [Google Scholar]
44. MacFarlane S. A., Brown D. J. F., Bol J. F. 1995; The transmission by nematodes of tobraviruses is not determined exclusively by the virus coat protein. European Journal of Plant Pathology 101:535–539
    [Google Scholar]
45. MacFarlane S. A., Wallis C. V., Brown D. J. F. 1996; Multiple virus genes involved in the nematode transmission of pea early browning virus. Virology 219:417–422
    [Google Scholar]
46. MacFarlane S. A., Vassilakos N., Brown D. J. F. 1999; Similarities in the genome organization of tobacco rattle virus and pea early-browning virus isolates that are transmitted by the same vector nematode. Journal of General Virology 80:273–276
    [Google Scholar]
47. Mahir M. A.-M., Fortass M., Bos L. 1992; Identification and properties of a deviant isolate of the broad bean yellow band serotype of pea early- browning virus from faba bean ( Vicia faba ) in Algeria. Netherlands Journal of Plant Pathology 98:237–252
    [Google Scholar]
48. Mayo M. A., Robertson W. M., Legorburu F. J., Brierley K. M. 1994; Molecular approaches to an understanding of the transmission of plant viruses by nematodes. In Advances in Molecular Nematology pp. 277–293 Edited by Lamberti F., Giorgi C. De, Bird D. M. New York: Plenum Press;
    [Google Scholar]
49. Mooney A. L. 1998; Investigation of the role of PEBV RNA2 5′ noncoding sequences in RNA replication and protein expression. PhD thesis University of Dundee; UK:
    [Google Scholar]
50. Mueller A.-M., Mooney A. L., MacFarlane S. A. 1997; Replication of in vitro tobravirus recombinants shows that the specificity of template recognition is determined by 5′ non-coding but not 3′ non-coding sequences. Journal of General Virology 78:2085–2088
    [Google Scholar]
51. Namba K., Stubbs G. 1986; Structure of tobacco mosaic virus at 3·6 Å resolution: implications for assembly. Science 231:1401–1406
    [Google Scholar]
52. Pelham H. R. B. 1979; Translation of tobacco rattle virus RNAs in vitro : four proteins from three RNAs. Virology 97:256–265
    [Google Scholar]
53. Ploeg A. T., Asjes C. J., Brown D. J. F. 1991; Tobacco rattle virus serotypes and associated nematode vector species of Trichodoridae in the bulb-growing areas in the Netherlands. Netherlands Journal of Plant Pathology 97:311–319
    [Google Scholar]
54. Ploeg A. T., Robinson D. J., Brown D. J. F. 1993a; RNA-2 of tobacco rattle virus encodes the determinants of transmissibility by trichodorid vector nematodes. Journal of General Virology 74:1463–1466
    [Google Scholar]
55. Ploeg A. T., Mathis A., Bol J. F., Brown D. J. F., Robinson D. J. 1993b; Susceptibility of transgenic tobacco plants expressing tobacco rattle virus coat protein to nematode- transmitted and mechanically inoculated tobacco rattle virus. Journal of General Virology 74:2709–2715
    [Google Scholar]
56. Prüfer D., Tacke E., Schmitz J., Kull B., Kaufmann A., Rohde W. 1992; Ribosomal frameshifting in plants: a novel signal directs the −1 frameshift in the synthesis of the putative viral replicase of potato leafroll luteovirus. EMBO Journal 11:1111–1117
    [Google Scholar]
57. Robinson D. J. 1983; RNA species of tobacco rattle virus strains and their nucleotide sequence relationships. Journal of General Virology 64:657–665
    [Google Scholar]
58. Robinson D. J., Harrison B. D. 1985a; Unequal variation in the two genome parts of tobraviruses and evidence for the existence of three separate viruses. Journal of General Virology 66:171–176
    [Google Scholar]
59. Robinson D. J., Harrison B. D. 1985b; Evidence that broad bean yellow band virus is a new serotype of pea early-browning virus. Journal of General Virology 66:2003–2009
    [Google Scholar]
60. Robinson D. J., Harrison B. D. 1989a; Tobacco rattle virus. CMI/AAB Descriptions of Plant Viruses, no. 346
    [Google Scholar]
61. Robinson D. J., Harrison B. D. 1989b; Pepper ringspot virus. CMI/AAB Descriptions of Plant Viruses, no. 347
    [Google Scholar]
62. Robinson D. J., Mayo M. A., Fritsch C., Jones A. T., Raschké J. H. 1983; Origin and messenger activity of two small RNA species found in particles of tobacco rattle virus strain SYM. Journal of General Virology 64:1591–1599
    [Google Scholar]
63. Robinson D. J., Hamilton W. D. O., Harrison B. D., Baulcombe D. C. 1987; Two anomalous tobravirus isolates: evidence for RNA recombination in nature. Journal of General Virology 68:2551–2561
    [Google Scholar]
64. Rozanov M. N., Koonin E. V., Gorbalenya A. E. 1992; Conservation of the putative methyltransferase domain: a hallmark of the ‘Sindbis- like’ supergroup of positive-strand RNA viruses. Journal of General Virology 73:2129–2134
    [Google Scholar]
65. Russo M., Gallitelli D., Vovlas C., Savino V. 1984; Properties of broad bean yellow band virus, a possible new tobravirus. Annals of Applied Biology 105:223–230
    [Google Scholar]
66. Schmitt C., Mueller A.-M., Mooney A., Brown D., MacFarlane S. 1998; Immunological detection and mutational analysis of the RNA2-encoded nematode transmission proteins of pea early browning virus. Journal of General Virology 79:1281–1288
    [Google Scholar]
67. Strimmer K., von Haeseler A. 1996; Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies. Molecular Biology and Evolution 13:964–969
    [Google Scholar]
68. Sudarshana M. R., Berger P. H. 1998; Nucleotide sequence of both genomic RNAs of a North American tobacco rattle virus isolate. Archives of Virology 143:1535–1544
    [Google Scholar]
69. Swanson M. M., MacFarlane S. A. 1999; The E116 isolate of Dutch pea early-browning virus is a recombinant virus. Virus Research 60:87–94
    [Google Scholar]
70. Taylor C. E., Brown D. J. F. 1997 Nematode Vectors of Plant Viruses New York: CAB International;
71. Uhde K., Koenig R., Lesemann D. E. 1998; An onion isolate of tobacco rattle virus: reactivity with an antiserum to Hypochoeris mosaic virus, a putative furovirus, and molecular analysis of its RNA 2. Archives of Virology 143:1041–1053
    [Google Scholar]
72. Urban C., Zerfaß K., Fingerhut C., Beier H. 1996; UGA suppression by \batchmode \documentclass[fleqn,10pt,legalpaper]{article} \usepackage{amssymb} \usepackage{amsfonts} \usepackage{amsmath} \pagestyle{empty} \begin{document} \(tRNA_{CmCA\ }^{Trp}\) \end{document} occurs in diverse virus RNAs due to a limited influence of the codon context. Nucleic Acids Research 24:3424–3430
    [Google Scholar]
73. van Belkum A., Cornelissen B., Linthorst H., Bol J., Pleij C., Bosch L. 1987; tRNA-like properties of tobacco rattle virus RNA. Nucleic Acids Research 15:2837–2850
    [Google Scholar]
74. van Dun C. M. P., Bol J. F. 1988; Transgenic tobacco plants accumulating tobacco rattle virus coat protein resist infection with tobacco rattle virus and pea early browning virus. Virology 167:649–652
    [Google Scholar]
75. Wallis C. V. 1992; The molecular biology of pea early browning virus RNA2. PhD thesis University of; Birmingham, UK:
    [Google Scholar]
76. Wang D., MacFarlane S. A., Maule A. J. 1997; Viral determinants of pea early browning virus seed transmission in pea. Virology 234:112–117
    [Google Scholar]
77. Zerfass K., Beier H. 1992; The leaky UGA termination codon of tobacco rattle virus RNA is suppressed by tobacco chloroplast and cytoplasmic tRNAs^Trp with CmCA anticodon. EMBO Journal 11:4167–4173
    [Google Scholar]
78. Ziegler-Graff V., Guilford P. J., Baulcombe D. C. 1991; Tobacco rattle virus RNA-1 29K gene product potentiates viral movement and also affects symptom induction in tobacco. Virology 182:145–155
    [Google Scholar]