Reference collection of strains of the Salmonella typhimurium complex from natural populations

References

1. Barker R. M., Kearney G. M., Nicholson P., Blair A. L., Porter R. C., Crichton P. B. 1988; Types of Salmonella paratyphi B and their phylogenetic significance. Journal of Medical Microbiology 26:285–293
   [Google Scholar]
2. Beltran P., Musser J. M., Helmuth R., Farmer J. J. III, Frerichs W. M., Wachsmuth I. K., Ferris K., McWhorter A. C., Wells J. G., Cravioto A., Selander R. K. 1988; Toward a population genetic analysis of Salmonella:, genetic diversity and relationships among strains of serotypes S. choleraesuis, S. derby, S. dublin, S. enteritidis, S. heidelberg, S. infantis, S. newport, and S. typhimurium . Proceedings of the National Academy of Sciences of the United States of America 857753–7757
   [Google Scholar]
3. Crosa J. H., Brenner D. J., Ewing W. H., Falkow S. 1973; Molecular relationships among the salmonellae. Journal of Bacteriology 115:307–315
   [Google Scholar]
4. DuBose R. F., Dykhuizen D. E., Hartl D. L. 1988; Genetic exchange among natural isolates of bacteria: recombination within the phoA gene of Escherichia coli . Proceedings of the National Academy of Sciences of the United States of America 857036–7040
   [Google Scholar]
5. Duguid J. P., Anderson E. S., Alfredsson G. A., Barker R. M., Old D. C. 1975; A new biotyping scheme for Salmonella typhimurium and its phylogenetic significance. Journal of Medical Microbiology 8:149–166
   [Google Scholar]
6. Ewing W. H. 1986 Edwards and Ewing’s Identification of Enterobac-teriaceae, 4. New York: Elsevier;
   [Google Scholar]
7. Frankel G., Newton S. M. C., Schoolnik G. K., Stocker B. A. D. 1989; Intragenic recombination in a flagellin gene: characterization of the HI j gene of Salmonella typhi . EMBO Journal 8:3149–3152
   [Google Scholar]
8. Hall B. C., Parker L. L., Betts P. W., DuBose R. F., Sawyer S. A., Hartl D. L. 1989; IS103, a new insertion element in Escherichia coli: characterization and distribution in natural populations. Genetics 121:423–431
   [Google Scholar]
9. Hartl D. L., Sawyer S. A. 1988; Why do unrelated insertion sequences occur together in the genome of Escherichia coli?. Genetics 118:537–544
   [Google Scholar]
10. Le Minor L. 1984; Salmonella Lignières 1900, 389. In Bergey’s Manual of Systematic Bacteriology 1427–458 Krieg N. R., Holt J. G. Baltimore: Williams & Wilkins;
    [Google Scholar]
11. Le Minor L., Popoff M. Y., Laurent B., Hermant D. 1986; Individualisation d’une septième sous-espece de Salmonella S. choleraesuis subsp. indica subsp. nov. Annales de l’Institut Pasteur/Microbiologie 137B:211–217
    [Google Scholar]
12. Nei M. 1987 Molecular Evolutionary Genetics New York: Columbia University Press;
    [Google Scholar]
13. Neidhardt F. C., Ingraham J. L., Low K. B., Magasanik B., Schaechter M., Umbarger H. E. 1987 Escherichia coli and Salmonella typhimurium. Cellular and Molecular Biology 1 and 2 Washington, DC: American Society for Microbiology;
    [Google Scholar]
14. Ochman H., Selander R. K. 1984; Standard reference strains of Escherichia coli from natural populations. Journal of Bacteriology 157:690–693
    [Google Scholar]
15. Reeves M. W., Evins G. M., Heiba A. A., Plikaytis B. D., Farmer J. J. III 1989; Clonal nature of Salmonella typhi and its genetic relatedness to other salmonellae as shown by multilocus enzyme electrophoresis, and proposal of Salmonella bongori comb, nov. Journal of Clinical Microbiology 27:313–320
    [Google Scholar]
16. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4:406–425
    [Google Scholar]
17. Selander R. K., Caugant D. A., Ochman H., Musser J. M., Gilmour M. N., Whittam T. S. 1986; Methods of multilocus enzyme electrophoresis for bacterial population genetics and systematics. Applied and Environmental Biology 51:873–884
    [Google Scholar]
18. Selander R. K., Caugant D. A., Whittam T. S. 1987; Genetic structure and variation in natural populations of Escherichia coli . In Escherichia coli and Salmonella typhimurium. Cellular and Molecular Biology 21625–1648 Neidhardt F. C., Ingraham J. L., Low K. B., Magasanik B., Schaechter M., Umbarger H. E. Washington, DC: American Society for Microbiology;
    [Google Scholar]
19. Selander R. K., Beltran P., Smith N. H., Barker R. M., Crichton P. B., Old D. C., Musser J. M., Whittam T. S. 1990a; Genetic population structure, clonal phylogeny, and pathogenicity of Salmonella paratyphi B. Infection and Immunity 58:1891–1901
    [Google Scholar]
20. Selander R. K., Beltran P., Smith N. H., Helmuth R., Rubin F. A., Kopecko D. J., Ferris K., Tall B. D., Cravioto A., Musser J. M. 1990b; Evolutionary genetic relationships of clones of Salmonella that cause human typhoid and other enteric fevers. Infection and Immunity 58:2262–2275
    [Google Scholar]
21. Smith N. H., Selander R. K. 1990; Sequence invariance of the antigen-coding central region of the phase 1 flagellar filament gene (fliC) among strains of Salmonella typhimurium . Journal of Bacteriology 172:603–609
    [Google Scholar]
22. Smith N. H., Beltran P., Selander R. K. 1990; Recombination of Salmonella phase 1 flagellin genes generates new serovars. Journal of Bacteriology 172:2209–2216
    [Google Scholar]
23. Stoltzfus A., Leslie J. F., Milkman R. 1988; Molecular evolution of the Escherichia coli chromosome. I. Analysis of structure and natural variation in a previously uncharacterized region between trp and tonB . Genetics 120:345–358
    [Google Scholar]