1887

Abstract

We propose the creation of seven new species in the genus (family ) in addition to the four existing species, and naming species in a host-independent manner using the format . Only the virus species names would change; virus isolates would still be referred to by their original names. The original species would be re-designated as (original designation ), (), () and (). The seven new species (and example isolates) would be (pronghorn pestivirus), (Bungowannah virus), (giraffe pestivirus), (Hobi-like pestivirus), (Aydin-like pestivirus), (rat pestivirus) and (atypical porcine pestivirus). A bat-derived virus and pestiviruses identified from sheep and goat (Tunisian sheep pestiviruses), which lack complete coding region sequences, may represent two additional species.

Keyword(s): ICTV , Pestivirus and taxonomy
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2017-08-01
2024-03-28
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References

  1. Simmonds P, Becher P, Bukh J, Gould EA, Meyers G et al. ICTV virus taxonomy profile: flaviviridae. J Gen Virol 2017; 98:2–3 [View Article][PubMed]
    [Google Scholar]
  2. Becher P, Avalos Ramirez R, Orlich M, Cedillo Rosales S, König M et al. Genetic and antigenic characterization of novel pestivirus genotypes: implications for classification. Virology 2003; 311:96–104 [View Article][PubMed]
    [Google Scholar]
  3. Houe H. Economic impact of BVDV infection in dairies. Biologicals 2003; 31:137–143 [View Article][PubMed]
    [Google Scholar]
  4. Moennig V, Becher P. Pestivirus control programs: how far have we come and where are we going?. Anim Health Res Rev 2015; 16:83–87 [View Article][PubMed]
    [Google Scholar]
  5. Becher P, Orlich M, Shannon AD, Horner G, König M et al. Phylogenetic analysis of pestiviruses from domestic and wild ruminants. J Gen Virol 1997; 78:1357–1366 [View Article][PubMed]
    [Google Scholar]
  6. Vilcek S, Nettleton PF. Pestiviruses in wild animals. Vet Microbiol 2006; 116:1–12 [View Article][PubMed]
    [Google Scholar]
  7. Tautz N, Tews BA, Meyers G. Chapter two – The molecular biology of Pestiviruses. In: Advances in Virus Research 2015 pp. 47–160
    [Google Scholar]
  8. Weber MN, Streck AF, Silveira S, Mósena AC, Silva MS et al. Homologous recombination in pestiviruses: identification of three putative novel events between different subtypes/genogroups. Infect Genet Evol 2015; 30:219–224 [View Article][PubMed]
    [Google Scholar]
  9. Becher P, Tautz N. RNA recombination in pestiviruses: cellular RNA sequences in viral genomes highlight the role of host factors for viral persistence and lethal disease. RNA Biol 2011; 8:216–224 [View Article][PubMed]
    [Google Scholar]
  10. Kümmerer BM, Stoll D, Meyers G. Bovine viral diarrhea virus strain Oregon: a novel mechanism for processing of NS2-3 based on point mutations. J Virol 1998; 72:4127–4138[PubMed]
    [Google Scholar]
  11. Postel A, Hansmann F, Baechlein C, Fischer N, Alawi M et al. Presence of atypical porcine pestivirus (APPV) genomes in newborn piglets correlates with congenital tremor. Sci Rep 2016; 6:27735 [View Article][PubMed]
    [Google Scholar]
  12. Postel A, Schmeiser S, Oguzoglu TC, Indenbirken D, Alawi M et al. Close relationship of ruminant pestiviruses and classical Swine Fever virus. Emerg Infect Dis 2015; 21:668–672 [View Article][PubMed]
    [Google Scholar]
  13. Hause BM, Collin EA, Peddireddi L, Yuan F, Chen Z et al. Discovery of a novel putative atypical porcine pestivirus in pigs in the USA. J Gen Virol 2015; 96:2994–2998 [View Article][PubMed]
    [Google Scholar]
  14. Kirkland PD, Frost MJ, Finlaison DS, King KR, Ridpath JF et al. Identification of a novel virus in pigs—Bungowannah virus: a possible new species of pestivirus. Virus Res 2007; 129:26–34 [View Article][PubMed]
    [Google Scholar]
  15. Liu L, Kampa J, Belák S, Baule C. Virus recovery and full-length sequence analysis of atypical bovine pestivirus Th/04_KhonKaen. Vet Microbiol 2009; 138:62–68 [View Article][PubMed]
    [Google Scholar]
  16. Schirrmeier H, Strebelow G, Depner K, Hoffmann B, Beer M. Genetic and antigenic characterization of an atypical pestivirus isolate, a putative member of a novel pestivirus species. J Gen Virol 2004; 85:3647–3652 [View Article][PubMed]
    [Google Scholar]
  17. Avalos-Ramirez R, Orlich M, Thiel HJ, Becher P. Evidence for the presence of two novel pestivirus species. Virology 2001; 286:456–465 [View Article][PubMed]
    [Google Scholar]
  18. Vilcek S, Ridpath JF, van Campen H, Cavender JL, Warg J. Characterization of a novel pestivirus originating from a pronghorn antelope. Virus Res 2005; 108:187–193 [View Article][PubMed]
    [Google Scholar]
  19. Neill JD, Ridpath JF, Fischer N, Grundhoff A, Postel A et al. Complete genome sequence of pronghorn virus, a pestivirus. Genome Announc 2014; 2:e00575-14 [View Article][PubMed]
    [Google Scholar]
  20. Firth C, Bhat M, Firth MA, Williams SH, Frye MJ et al. Detection of zoonotic pathogens and characterization of novel viruses carried by commensal Rattus norvegicus in New York City. MBio 2014; 5:e01933-14 [View Article][PubMed]
    [Google Scholar]
  21. Wu Z, Ren X, Yang L, Hu Y, Yang J et al. Virome analysis for identification of novel mammalian viruses in bat species from Chinese provinces. J Virol 2012; 86:10999–11012 [View Article][PubMed]
    [Google Scholar]
  22. Liu L, Xia H, Wahlberg N, Belák S, Baule C. Phylogeny, classification and evolutionary insights into pestiviruses. Virology 2009; 385:351–357 [View Article][PubMed]
    [Google Scholar]
  23. Ridpath JF. A need to define characteristics to be used in the taxonomy of the expanding pestivirus genus. Berl Munch Tierarztl Wochenschr 2013; 126:462–467[PubMed]
    [Google Scholar]
  24. Smith DB, Becher P, Bukh J, Gould EA, Meyers G et al. Proposed update to the taxonomy of the genera Hepacivirus and Pegivirus within the Flaviviridae family. J Gen Virol 2016; 97:2894–2907 [View Article][PubMed]
    [Google Scholar]
  25. Simmonds P. SSE: a nucleotide and amino acid sequence analysis platform. BMC Res Notes 2012; 5:50 [View Article][PubMed]
    [Google Scholar]
  26. Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004; 32:1792–1797 [View Article][PubMed]
    [Google Scholar]
  27. De Mia GM, Greiser-Wilke I, Feliziani F, Giammarioli M, De Giuseppe A. Genetic characterization of a caprine pestivirus as the first member of a putative novel pestivirus subgroup. J Vet Med B Infect Dis Vet Public Health 2005; 52:206–210 [View Article][PubMed]
    [Google Scholar]
  28. Thabti F, Letellier C, Hammami S, Pépin M, Ribière M et al. Detection of a novel border disease virus subgroup in Tunisian sheep. Arch Virol 2005; 150:215–229 [View Article][PubMed]
    [Google Scholar]
  29. Ciulli S, Purpari G, Agnello S, di Marco P, di Bella S et al. Evidence for Tunisian-like pestiviruses presence in small ruminants in Italy since 2007. Transbound Emerg Dis 2016 in press [View Article][PubMed]
    [Google Scholar]
  30. Giangaspero M, Harasawa R. Species characterization in the genus pestivirus according to palindromic nucleotide substitutions in the 5'-untranslated region. J Virol Methods 2011; 174:166–172 [View Article][PubMed]
    [Google Scholar]
  31. Bauermann FV, Flores EF, Ridpath JF. Antigenic relationships between Bovine viral diarrhea virus 1 and 2 and HoBi virus. J Vet Diagn Invest 2012; 24:253–261 [View Article]
    [Google Scholar]
  32. Postel A, Meyer D, Petrov A, Becher P. Recent emergence of a novel porcine pestivirus: interference with classical swine fever diagnosis?. Emerg Microbes Infect 2017; 6:e19 [View Article][PubMed]
    [Google Scholar]
  33. Dean HJ, Leyh R. Cross-protective efficacy of a bovine viral diarrhea virus (BVDV) type 1 vaccine against BVDV type 2 challenge. Vaccine 1999; 17:1117–1124 [View Article][PubMed]
    [Google Scholar]
  34. Stapleton JT, Foung S, Muerhoff AS, Bukh J, Simmonds P. The GB viruses: a review and proposed classification of GBV-A, GBV-C (HGV), and GBV-D in genus Pegivirus within the family Flaviviridae. J Gen Virol 2011; 92:233–246 [View Article][PubMed]
    [Google Scholar]
  35. Lamp B, Schwarz L, Högler S, Riedel C, Sinn L et al. Novel Pestivirus Species in Pigs, Austria, 2015. Emerg Infect Dis 2017; 23:1176–1179 [View Article][PubMed]
    [Google Scholar]
  36. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 2013; 30:2725–2729 [View Article][PubMed]
    [Google Scholar]
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