Proposal of a neotype strain (A1-86) for Eubacterium rectale. Request for an Opinion

References

1. Aminov, R. I., Walker, A. W., Duncan, S. H., Harmsen, H. J. M., Welling, G. W. & Flint, H. J.(2006). Molecular diversity, cultivation, and improved FISH detection of a dominant group of human gut bacteria related to Roseburia and Eubacterium rectale. Appl Environ Microbiol 72, 6371–6376.[CrossRef] [Google Scholar]
2. Andreesen, J. R.(1992). The genus Eubacterium. In The Prokaryotes, a Handbook on the Biology of Bacteria: Ecophysiology, Isolation, Identification, Applications, 2nd edn, pp. 1914–1924. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. New York: Springer.
3. Archer, S. Y., Meng, S. F., Sheh, A. & Hodin, R. A.(1998). p21 (WAF1) is required for butyrate mediated growth inhibition of human colon cancer cells. Proc Natl Acad Sci U S A 95, 6791–6796.[CrossRef] [Google Scholar]
4. Avivi-Green, C., Polak-Charcon, S., Madar, Z. & Schwartz, B.(2000). Apoptosis cascade proteins are regulated in vivo by high intracolonic butyrate concentration: correlation with colon cancer inhibition. Oncol Res 12, 83–95. [Google Scholar]
5. Barcenilla, A., Pryde, S. E., Martin, J. C., Duncan, S. H., Stewart, C. S., Henderson, C. & Flint, H. J.(2000). Phylogenetic relationships of butyrate-producing bacteria from the human gut. Appl Environ Microbiol 66, 1654–1661.[CrossRef] [Google Scholar]
6. Collins, M. D., Lawson, P. A., Willems, A., Cordoba, J. J., Fernandez-Garayzabal, J., Garcia, P., Cai, J., Hippe, H. & Farrow, J. A. E.(1994). The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations. Int J Syst Bacteriol 44, 812–826.[CrossRef] [Google Scholar]
7. Duncan, S. H., Hold, G. L., Barcenilla, A., Stewart, C. S. & Flint, H. J.(2002).Roseburia intestinalis sp. nov., a novel saccharolytic, butyrate-producing bacterium from human faeces. Int J Syst Evol Microbiol 52, 1615–1620.[CrossRef] [Google Scholar]
8. Duncan, S. H., Aminov, R. I., Scott, K. P., Louis, P., Stanton, T. B. & Flint, H. J.(2006). Proposal of Roseburia faecis sp. nov., Roseburia hominis sp. nov. and Roseburia inulinivorans sp. nov., based on isolates from human faeces. Int J Syst Evol Microbiol 56, 2437–2441.[CrossRef] [Google Scholar]
9. Eckburg, P. B., Bik, E. M., Bernstein, C. N., Purdom, E., Dethlefsen, L., Sargent, M., Gill, S. R., Nelson, K. E. & Relman, D. A.(2005). Diversity of the human intestinal microbial flora. Science 308, 1635–1638.[CrossRef] [Google Scholar]
10. Finegold, S. M., Sutter, V. L. & Mathison, G. E.(1983). Normal indigenous flora. In: Human Intestinal Microflora in Health and Disease, pp. 3–31. Edited by D. J. Hengtes. NY: Academic Press.
11. Hauduroy, P., Ehringer, A., Guillot, G. & Magrou, J.(1937). Dictionnaire des bactéries pathogens. Masson, Paris, France.
12. Hold, G. L., Pryde, S. E., Russell, V. J., Furrie, E. & Flint, H. J.(2002). Assessment of microbial diversity in human colonic samples by 16S rDNA sequence analysis. FEMS Microbiol Ecol 39, 33–39.[CrossRef] [Google Scholar]
13. Krumholz, L. R. & Bryant, M. P.(1986).Eubacterium oxidoreducens sp. nov. requiring H₂ or formate to degrade gallate, pyrogallol, phloroglucinol and quercetin. Arch Microbiol 144, 8–14.[CrossRef] [Google Scholar]
14. Louis, P., Duncan, S. H., McCrae, S. I., Millar, J., Jackson, M. S. & Flint, H. J.(2004). Restricted distribution of the butyrate kinase pathway among butyrate-producing bacteria from the human colon. J Bacteriol 186, 2099–2106.[CrossRef] [Google Scholar]
15. Moore, W. E. C. & Holdeman, L. V.(1974). Human fecal flora: the normal flora of 20 Japanese-Hawaiians. Appl Microbiol 27, 961–979. [Google Scholar]
16. Moore, W. E. C. & Holdeman Moore, L. V.(1986). Genus Eubacterium Prévot 1938 294^AL. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1353–1373. Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
17. Prévot, A. R., Turpin, A. & Kaiser, P.(1967). Les bactéries anaérobies. Dunod, Paris, pp. 1–2188.
18. Pryde, S. E., Duncan, S. H., Hold, G. L., Stewart, C. S. & Flint, H. J.(2002). The microbiology of butyrate formation in the human colon. FEMS Microbiol Lett 217, 133–139.[CrossRef] [Google Scholar]