Geometrically Reduced Number of Protein Ground State Candidates

M. R. Ejtehadi, N. Hamedani, and V. Shahrezaei
Phys. Rev. Lett. 82, 4723 – Published 7 June 1999
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Abstract

Geometrical properties of protein ground states are studied using an algebraic approach. It is shown that independent from intermonomer interactions, the collection of ground state candidates for any folded protein is unexpectedly small: For the case of a two-parameter hydrophobic-polar lattice model for L-mers, the number of these candidates grows only as L2. Moreover, by exact enumeration, we show there are some sequences which have one absolute unique native state. These absolute ground states have perfect stability against any change of intermonomer interaction potential.

  • Received 10 November 1998

DOI:https://doi.org/10.1103/PhysRevLett.82.4723

©1999 American Physical Society

Authors & Affiliations

M. R. Ejtehadi1, N. Hamedani1,2, and V. Shahrezaei1,2

  • 1Institute for studies in Theoretical Physics and Mathematics, Tehran P.O. Box 19395-5531, Iran
  • 2Department of Physics, Sharif University of Technology, Tehran P.O. Box 11365-9161, Iran

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Vol. 82, Iss. 23 — 7 June 1999

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