DNA translocation through nanopores is one of the most promising strategies for next-generation sequencing technologies. Most experimental and numerical works have focused on polymer translocation biased by electrophoresis, where a pulling force acts on the polymer within the nanopore. An alternative strategy, however, is emerging, which uses optical or magnetic tweezers. In this case, the pulling force is exerted directly at one end of the polymer, which strongly modifies the translocation process. In this paper, we report numerical simulations of both linear and structured (mimicking DNA) polymer models, simple enough to allow for a statistical treatment of the pore structure effects on the translocation time probability distributions. Based on extremely extended computer simulation data, we (i) propose scaling arguments for an extension of the predicted translocation times $\tau \sim N^2{F}^{-1}$ over the moderate forces range and (ii) analyze the effect of pore size and polymer structuration on translocation times $\tau$.

• Received 29 November 2017
• Revised 18 January 2018

DOI:https://doi.org/10.1103/PhysRevE.97.022501