Persistent Identifier
|
doi:10.15454/AEC4BN |
Publication Date
|
2019-06-17 |
Title
| DROPS maize genotyping elaborate dataset |
Point of Contact
|
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Nicolas, Stephane (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon)
Madur, Delphine (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon) |
Author
| Nicolas, Stéphane (INRA - Institut National de la Recherche, GQE-Le Moulon) - ORCID: 0000-0003-0758-9930
Madur, Delphine (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon)
Negro, Sandra (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon)
Combes, Valérie (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon)
Bauland, Cyril (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon)
Tardieu, François (INRA - Institut National de la Recherche Agronomique, LEPSE) - ORCID: 0000-0002-7287-0094
Millet, Emilie (INRA - Institut National de la Recherche Agronomique, LEPSE) - ORCID: 0000-0002-2913-4892
Welcker, Claude (INRA - Institut National de la Recherche Agronomique, LEPSE) - ORCID: 0000-0002-8275-1259
Charcosset, Alain (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon) - ORCID: 0000-0001-6125-503X |
Distributor
| INRA |
Description
| These three dataset correspond to three elaborate genotyping matrix after filtering and imputation published by Negro et al., (2019) in BMC Plant Biology: "Genotyping-by-sequencing and SNP arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies" These three dataset were obtained using three different genotyping technologies 50K SNP Illumina Infinium HD arrays (Ganal et al., 2011), 600K SNP Affymetrix Axiom arrays (Unterseer et al., 2014) and Genotyping By Sequencing from Cornell Institute (Elshire et al, 2011; Glaubitz et al., 2014) on a collection of 247 maize inbred lines corresponding to Drops Panel (Millet et al., 2016). These data were obtained in the frame of the F7P European project DROPS (DROugh-yielding PlantS, F. Tardieu Coord.) and ANR PIA Amaizing (A. Charcosset) Raw genotyping dataset and more information were maintained in the maize database "ThaliaDB" at GQE-Le Moulon (https://thalia.moulon.inra.fr). (2018-10-24) |
Subject
| Agricultural Sciences |
Keyword
| Maize, genotyping, Zea mays, 600K Affymetrix Axiom Arrays, Genotyping By Sequencing, 50K Illumina Infinium HD |
Topic Classification
| Plant Breeding and Plant Products |
Data Type
| Dataset |
Data Origin
| experimental data; analysis data |
Data Source
| https://thalia.moulon.inra.fr/thalia/ |
Characteristic of Sources
| Database |
Life cycle step
| Data processing; Data processing: Aggregation; Data processing: Data integration; Data processing: Imputation |
Related Publication
| Sandra S. Negro, Emilie J. Millet, Delphine Madur, Cyril Bauland, Valérie Combes, Claude Welcker, François Tardieu, Alain Charcosset, Stéphane D. Nicolas (2019) Genotyping-by-sequencing and SNP arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies. arXiv: 10.1101/476598 https://www.biorxiv.org/content/early/2018/11/23/476598
Negro, S.S., Millet, E.J., Madur, D., Bauland C., Combes V., Welcker C., Tardieu F., Charcosset A. and S.D. Nicolas. Genotyping-by-sequencing and SNP-arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies. BMC Plant Biol 19, 318 (2019) doi: doi: 10.1186/s12870-019-1926-4 https://bmcplantbiol.biomedcentral.com/track/pdf/10.1186/s12870-019-1926-4 |
Related Dataset
| Association Studies: doi:10.15454/6TL2N4 https://doi.org/10.15454/6TL2N4
Phenotyping: doi:10.15454/IASSTN https://doi.org/10.15454/IASSTN |
Funding Information
| European Commission: FP7-KBBE-2009-1-2-05
ANR PIA: ANR-10-BTBR-01 |
Project Information
| 244374 DROPS (Drought-tolerant yielding plants) |
Depositor
| Nicolas, Stéphane |
Deposit Date
| 2018-10-24 |