Characterization of oral and cloacal microbial communities of wild and rehabilitated loggerhead sea turtles (Caretta caretta)

Published: 26 August 2021| Version 1 | DOI: 10.17632/45skyv5hzy.1
Contributor:
Klara Filek

Description

Dataset related to the publication Filek et al. 2021 "Characterization of oral and cloacal microbial communities of wild and rehabilitated loggerhead sea turtles (Caretta caretta)" The data here consist of raw read count with assigned taxonomy and representative sequences (raw_reads_taxonomy_sequences.csv) and extended metadata describing each sample (extended_metadata.csv). qiime2_import.txt describes the pipeline used in QIIME2 to analyze the sequences.

Files

Steps to reproduce

Refer to qiime2_import.txt for qiime2 sequence input and downstream analyses. Raw reads and taxonomic assignments are provided in raw_reads_taxonomy_sequences.csv and extended metadata describing each sample in extended_metadata.csv

Institutions

Sveuciliste u Zagrebu Prirodoslovno-Matematicki Fakultet

Categories

Natural Sciences, Microbiome, Microbiota

Licence