Identification and Expression of the Multidrug and Toxic Compound Extrusion (MATE) Gene Family in Capsicum annuum and Solanum tuberosum
Abstract
:1. Introduction
2. Results
2.1. Identification of MATE Genes in the Pepper and Potato Genomes
2.2. Phylogenetic Analysis and Structural Characterization of Pepper MATE Genes
2.3. Chromosomal Distribution and Duplication of Pepper and Potato MATE Genes
2.4. Collinearity Analysis of MATE Genes between Pepper and Potato
2.5. Analysis of Cis-Regulatory Elements in MATE Promoters
2.6. Analysis of Pepper CaMATE Gene Expression Patterns
2.7. Expression Analysis of Phytohormone- and Stress-Responsive Pepper CaMATE Genes
3. Discussion
3.1. MATE Gene Family Conservation in the Solanaceae
3.2. Tandem Duplications Contributed to MATE Gene Expansion between Pepper and Potato
3.3. MATE Function and Gene Expression
4. Materials and Methods
4.1. MATE Gene Identification
4.2. Gene Structure and Domain Combinations Analysis
4.3. Gene Promoter Cis-Regulatory Elements and Protein Subcellular Predictions
4.4. Phylogenetic Analysis
4.5. Gene Duplication Synteny Analysis
4.6. Gene Expression Analysis
4.7. Quantitative RT-PCR Analysis
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
Abbreviations
ABA | abscisic acid |
Ca | Capsicum annuum |
CRE | cis-regulatory element |
GA | gibberellin |
GSDS | Gene Structure Display Server |
HMM | hidden Markov model |
IAA | indole-3-acetic acid |
Ka | non-synonymous distance |
Ks | synonymous distance |
MATE | Multidrug and Toxic Compound Extrusion |
MeJA | methyl jasmonate acid |
MEME | multiple EM for motif elicitation |
MUSCLE | Multiple Sequence Comparison by Log-Expectation |
MW | molecular weight |
Os | Oryza sativa |
pI | isoelectric point |
qRT-PCR | quantitative reverse transcription PCR |
SA | salicylic acid |
St | Solanum tuberosum |
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Chen, Q.; Wang, L.; Liu, D.; Ma, S.; Dai, Y.; Zhang, X.; Wang, Y.; Hu, T.; Xiao, M.; Zhou, Y.; et al. Identification and Expression of the Multidrug and Toxic Compound Extrusion (MATE) Gene Family in Capsicum annuum and Solanum tuberosum. Plants 2020, 9, 1448. https://0-doi-org.brum.beds.ac.uk/10.3390/plants9111448
Chen Q, Wang L, Liu D, Ma S, Dai Y, Zhang X, Wang Y, Hu T, Xiao M, Zhou Y, et al. Identification and Expression of the Multidrug and Toxic Compound Extrusion (MATE) Gene Family in Capsicum annuum and Solanum tuberosum. Plants. 2020; 9(11):1448. https://0-doi-org.brum.beds.ac.uk/10.3390/plants9111448
Chicago/Turabian StyleChen, Qinfang, Linna Wang, Di Liu, Sirui Ma, Yangshuo Dai, Xue Zhang, Yuxin Wang, Tian Hu, Ming Xiao, Ying Zhou, and et al. 2020. "Identification and Expression of the Multidrug and Toxic Compound Extrusion (MATE) Gene Family in Capsicum annuum and Solanum tuberosum" Plants 9, no. 11: 1448. https://0-doi-org.brum.beds.ac.uk/10.3390/plants9111448