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Published October 8, 2018 | Version 1
Software Open

Pathway and annotation database for iDEP

Creators

  • 1. South Dakota State University

Description

These files include the source code and related annotation and pathway data files that can be used to run iDEP (http://ge-lab.org/idep)  locally.  These files are current as of October 10, 2018, just before the publication of the paper on BMC Bioinformatics. The most recent version of source code can be found here: https://github.com/iDEP-SDSU/idep/

Note that all files need to be unzipped to the same folder and this line in server.R needs to be changed accordingly:

# relative path to data files
datapath = "../" 

For questions, please contact us http://ge-lab.org or https://twitter.com/StevenXGe

Notes

This is in support of our paper published in BMC Bioinformatics 2018: iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data Steven Xijin Ge1,*, Eun Wo Son1, and Runan Yao1

Files

convertIDs.zip

Files (4.9 GB)

Name Size Download all
md5:476f1c9d39a58e25c61917c771d1b33a
2.5 GB Preview Download
md5:33e1e842623d4adaf82a67fdfd7ef0d8
2.4 GB Preview Download
md5:1d8050be71dc4192575132f8e998d18e
1.7 MB Preview Download