Published March 19, 2023 | Version v1.0
Dataset Open

Graph construction method impacts variation representation and analyses in a bovine super-pangenome

Creators

  • 1. ETH Zurich

Description

Pangenomes for minigraph, pggb, and cactus containing assemblies from

  • Hereford (cattle reference genome)
  • Highland
  • Brown Swiss
  • Angus
  • Simmental
  • Original Braunvieh
  • Piedmontese
  • Nellore
  • Brahman
  • Yak
  • Bison
  • Gaur

 

Also contains the genomic region classifications for the ARS-UCD1.2 reference genome for

  • Satellites
  • Tandem repeats
  • Low mappability
  • Repetitive regions
  • Normal (everything else)

Files

Files (12.9 GB)

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md5:db7636a56ce88d4669e0d6cde7a96b82
34.6 MB Download
md5:976516a67d572d95afae63f4bdd2bb7b
12.9 GB Download