Published May 16, 2023
| Version v1
Software
Open
CNETML: maximum likelihood inference of phylogeny from copy number profiles of multiple samples
- 1. University College London
- 2. University of California San Diego; Queen Mary University of London
- 3. Institute of Cancer Research; Queen Mary University of London
Description
This folder includes the source code for CNETML v1.0 (https://github.com/ucl-cssb/cneta), a new maximum likelihood method designed to reconstruct the evolutionary history of multiple samples of a single patient which may be taken at different locations and/or times, which can take as input (relative) total integer copy numbers called from shallow whole genome sequencing data.
Files
cneta-1.zip
Files
(421.5 kB)
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