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SLAM-Seq analysis

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posted on 2022-10-02, 22:03 authored by Justin Williams

"slam_dunk_commands.txt" were based hg38 and need install SLAM-DUNK https://t-neumann.github.io/slamdunk/docs.html#docstart 


"runSLAMedgeR.R" were downstream analysis including PCA,DEG after get counts from SLAM-DUNK, need install R and packages using conda environment "TMM_Norm_R_environment.yml" 

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    SLAM-seqBioinformaticsBioinformatics Software

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