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Experimental Dataset for "Ensemble dynamics and information flow deduction from whole-brain imaging data" and "WormTensor: a clustering method for time-series whole-brain activity data from C. elegans”

dataset
posted on 2024-01-30, 03:24 authored by Yu ToyoshimaYu Toyoshima, Hirofumi Sato, Manami Kanamori, Moon Sun Jang, Koyo Kuze, Suzu Oe, Takayuki Teramoto, Daiki Nagata, Koki Tsuyuzaki, Kentaro Yamamoto, Itoshi NikaidoItoshi Nikaido, Yuishi Iwasaki, Ryo Yoshida, Takeshi IshiharaTakeshi Ishihara, Yuichi Iino

normalize1_withoutremove.zip is the time course of whole-brain activities of C. elegans for 28 animals used in Tsuyuzaki et al, "WormTensor: a clustering method for time-series whole-brain activity data from C. elegans” (BMC Bioinformatics, 2023, https://doi.org/10.1186/s12859-023-05230-2)

This dataset is superset of the data used in Toyoshima et al, "Ensemble dynamics and information flow deduction from whole-brain imaging data" (now in press at PLoS Comp Biol, https://doi.org/10.1371/journal.pcbi.1011848) or its preprint on bioRxiv 2022.11.18.517011 (https://doi.org/10.1101/2022.11.18.517011)

20221118freezed.7z is the dataset used in with TDE-RICA (https://github.com/YuToyoshima/TDE-RICA) and gKDR-GMM (https://github.com/yuichiiino1/gKDR-GMM).

Funding

JST CREST JPMJCR12W1

JST CREST JPMJCR22N4

JSPS KAKENHI 17H06113 "Grant-in-Aid for Scientific Research (S)"

JSPS KAKENHI 22H00416

JSPS KAKENHI 20K21805

JSPS KAKENHI 25115009

JSPS KAKENHI 19H04980 "Artificial Intelligence and Brain Science"

JST PREST JPMJPR1947

JSPS KAKENHI 26830006 "Grants-in-Aid for Young Scientists"

JSPS KAKENHI 18K14848 "Grants-in-Aid for Young Scientists"

JSPS KAKENHI 16H01418 "Resonance Bio"

JSPS KAKENHI 18H04728 "Resonance Bio"

JSPS KAKENHI 17H05970 "Navi-Science"

JSPS KAKENHI 19H04928 "Navi-Science"

JSPS KAKENHI 20115003 “Systems molecular ethology"

JSPS KAKENHI 20115009

JSPS KAKENHI 18H05135 "Brain information dynamics"

JSPS KAKENHI 24650167

JSPS KAKENHI 19H03326

JSPS KAKENHI 17H06113

JSPS KAKENHI 16H0654

JST PRESTO 7700000461

NTT-Kyushu University Collaborative Research

JSPS KAKENHI 21K15182

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