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Dictyostelid Assemblies and Annotations
dataset
posted on 2017-12-07, 10:53 authored by Reema Singh, Gernot Glöckner, Hajara Lawal, Christina Schilde, Geoff Barton, Pauline Schaap, Christian ColeChristian ColeIncluded herein are the de novo transcript sequences and annotations assembled from RNA-seq data in four Dictyostelid species: D. discoideum, D. fasciculatum, D. lacteum and P. pallidum.
The data comprise FASTA files for each step of the workflow: 1) Trinity, 2) PASAaa refinement and 3) PASAua re-annotation. For the PASAua data we include nucleotide sequences as well as protein products and GFF annotations of the gene/transcript models.
This data is from the following publication. Please cite the paper as well as this source if you use this data.
Singh, Reema, Hajara M. Lawal, Christina Schilde, Gernot Glöckner, Geoffrey J. Barton, Pauline Schaap, and Christian Cole. “Improved Annotation with de Novo Transcriptome Assembly in Four Social Amoeba Species.” BMC Genomics 18 (2017): 120. https://doi.org/10.1186/s12864-017-3505-0.
