1/1
Annotation of Non-redundant ORF unigenes to nucleotide and protein databases of "De novo assembly of the Brown trout (Salmo trutta m. fario) brain and muscle transcriptome: transcript annotation, tissue differential expression profile and SNP discovery"
Version 4 2020-09-03, 18:19
Version 3 2020-09-01, 14:50
Version 2 2020-09-01, 14:30
Version 1 2020-08-31, 16:43
dataset
posted on 2020-09-03, 18:19 authored by Joan FiblaJoan Fibla, Neus Oromí, Mariona Pascual-Pons, Jose Luis Royo, Antoni Palau, Marc FiblaThis data set contains processed results for the annotation of Non-redundant ORF unigenes at nucleotide (NCBI NT, 2018-01-22; RefSeq RNA, 2018-01-22) and protein (Swissprot, 2018-01-22;Refseq protein, 2018-01-22) databases:
Table S1: Megablast hit aligment of non-redundant ORF unigenes to reference nucleotide databases.xlsx). Non-redundant ORF unigenes annotated to nucleotide databases (34956 hits, 99.3%)Table S2: Blastx homology search of non-redundant ORF unigenes to reference protein databases.xlsx. Non-redundant ORF unigenes annotated to protein databases (29081 hits, 82.6%)
HTML file: Krona_pie_chart_on_Non_redundant_ORF_to_NCBI_nt_and_rnaREF_seq_2018__HTML_html.html. Taxonomic representation for GI numbers assigned to homologous sequences by Megablast Blast+ blastn tool were fetched from taxonomic information at NCBI by Galaxy tool Fetch taxonomic representation. Graphical representation of taxonomy was obtained by Galaxy tool Krona pie chart from taxonomic profile, both implemented at Galaxy Europe (https://usegalaxy.eu)
