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Supplementary files for transcriptome profiling of induced susceptibility effects on soybean- soybean aphid interaction
Version 5 2019-06-07, 13:08
Version 4 2019-05-22, 20:03
Version 3 2019-05-20, 18:38
Version 2 2019-05-19, 01:56
Version 1 2019-05-18, 18:28
dataset
posted on 2019-06-07, 13:08 authored by Surendra Neupane, Adam J Varenhorst, Madhav NepalMadhav NepalThis dataset consists of two Excel spreadsheet files in .xlsx format, a Supplementary File and Table S1 in .docx format. The image files are in .tiff format. The data were generated as part of a study which used RNA sequencing to generate transcriptional datasets for transcriptome profiling of induced susceptibility effects on soybean- soybean aphid (Hemiptera: Aphididae) interaction.
The data consists of the following files:
Supplementary file 1: Methodology description
Table S1: Statistics of the transcriptomic data using RNA-seq pipeline used in this study.
Figure S1: A flow chart representing experimental methods.
Figure S2: A flow chart showing the RNA-seq data analysis pipeline.
Figure S3: The hierarchical clustering of top 3,000 variable genes.
Figure S4: The correlation between the samples using the top 75% genes.
Figure S5: Quality metrics of G. max sequencing data. (a) Mean quality scores per position. (b) Per sequence quality scores. (c) GC content distribution. (d) Read length distribution
Data File 21: The transformed transcript abundance counts for all the samples.
Data File 22: The hierarchical clustering of top 3,000 variable genes.
