Trends in Molecular Diagnostics and Genotyping Tools Applied for Emerging Sporothrix Species
Abstract
:1. A Primer on Sporothrix and Sporotrichosis
2. Laboratorial Diagnostics of Sporotrichosis
3. Molecular Diagnosis
3.1. Internal Transcribed Spacer (ITS)
3.2. Multi-Locus Sequence Analysis (MLSA)
3.3. Conventional Polymerase Chain Reaction
3.4. Nested PCR
3.5. Rolling Circle Amplification (RCA)
3.6. Quantitative Real-Time PCR (qPCR)
3.7. Matrix-Assisted Laser Desorption Ionization Time-of-Flight Mass Spectrometry (MALDI-ToF MS)
4. Genotyping Tools
4.1. Restriction Fragment Length Polymorphism and PCR-RFLP
4.2. Molecular Typing by Mating-Type (MAT)
4.3. Amplified Fragment Length Polymorphism (AFLP)
4.4. Simple Sequence Repeats (SSRs)
4.5. Randomly Amplified Polymorphic DNA (RAPD)
4.6. Pulsed-Field Gel Electrophoresis (PFGE)
4.7. Whole-Genome Sequencing (WGS)
5. Perspectives of Future Molecular Methods
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
- Rodrigues, A.M.; Della Terra, P.P.; Gremiao, I.D.; Pereira, S.A.; Orofino-Costa, R.; de Camargo, Z.P. The threat of emerging and re-emerging pathogenic Sporothrix species. Mycopathologia 2020, 185, 813–842. [Google Scholar] [CrossRef] [PubMed]
- Schenck, B.R. On refractory subcutaneous abscesses caused by a fungus possibly related to the Sporotricha. Bull. Johns Hopkins Hosp. 1898, 9, 286–290. [Google Scholar]
- Hektoen, L.; Perkins, C.F. Refractory subcutaneous abscesses caused by Sporothrix schenckii: A new pathogenic fungus. J. Exp. Med. 1900, 5, 77–89. [Google Scholar] [CrossRef] [PubMed]
- Marimon, R.; Gené, J.; Cano, J.; Trilles, L.; Dos Santos Lazéra, M.; Guarro, J. Molecular phylogeny of Sporothrix schenckii. J. Clin. Microbiol. 2006, 44, 3251–3256. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Marimon, R.; Cano, J.; Gené, J.; Sutton, D.A.; Kawasaki, M.; Guarro, J. Sporothrix brasiliensis, S. globosa, and S. mexicana, three new Sporothrix species of clinical interest. J. Clin. Microbiol. 2007, 45, 3198–3206. [Google Scholar] [CrossRef] [Green Version]
- Cruz Choappa, R.M.; Vieille Oyarzo, P.I.; Carvajal Silva, L.C. Isolation of Sporothrix pallida complex in clinical and environmental samples from Chile. Rev. Argent. Microbiol. 2014, 46, 311–314. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Nesseler, A.; Schauerte, N.; Geiger, C.; Kaerger, K.; Walther, G.; Kurzai, O.; Eisenberg, T. Sporothrix humicola (Ascomycota: Ophiostomatales)—A soil-borne fungus with pathogenic potential in the eastern quoll (Dasyurus viverrinus). Med. Mycol. Case Rep. 2019, 25, 39–44. [Google Scholar] [CrossRef]
- De Meyer, E.M.; de Beer, Z.W.; Summerbell, R.C.; Moharram, A.M.; de Hoog, G.S.; Vismer, H.F.; Wingfield, M.J. Taxonomy and phylogeny of new wood- and soil-inhabiting Sporothrix species in the Ophiostoma stenoceras-Sporothrix schenckii complex. Mycologia 2008, 100, 647–661. [Google Scholar] [CrossRef] [Green Version]
- Ramírez-Soto, M.; Aguilar-Ancori, E.; Tirado-Sánchez, A.; Bonifaz, A. Ecological determinants of sporotrichosis etiological agents. J. Fungi 2018, 4, 95. [Google Scholar] [CrossRef] [Green Version]
- Zhang, Y.; Hagen, F.; Stielow, B.; Rodrigues, A.M.; Samerpitak, K.; Zhou, X.; Feng, P.; Yang, L.; Chen, M.; Deng, S.; et al. Phylogeography and evolutionary patterns in Sporothrix spanning more than 14,000 human and animal case reports. Persoonia 2015, 35, 1–20. [Google Scholar] [CrossRef] [Green Version]
- Morrison, A.S.; Lockhart, S.R.; Bromley, J.G.; Kim, J.Y.; Burd, E.M. An environmental Sporothrix as a cause of corneal ulcer. Med. Mycol. Case Rep. 2013, 2, 88–90. [Google Scholar] [CrossRef] [PubMed]
- Rodrigues, A.M.; Cruz Choappa, R.; Fernandes, G.F.; De Hoog, G.S.; Camargo, Z.P. Sporothrix chilensis sp. nov. (Ascomycota: Ophiostomatales), a soil-borne agent of human sporotrichosis with mild-pathogenic potential to mammals. Fungal Biol. 2016, 120, 246–264. [Google Scholar] [CrossRef] [PubMed]
- Rodrigues, A.M.; de Hoog, S.; de Camargo, Z.P. Emergence of pathogenicity in the Sporothrix schenckii complex. Med. Mycol. 2013, 51, 405–412. [Google Scholar] [CrossRef] [Green Version]
- Rodrigues, A.M.; Hagen, F.; de Camargo, Z.P. A spotlight on Sporothrix and sporotrichosis. Mycopathologia 2022, 1–5, in press. [Google Scholar] [CrossRef] [PubMed]
- Almeida-Silva, F.; Rabello, V.B.; Scramignon-Costa, B.D.; Zancopé-Oliveira, R.M.; de Macedo, P.M.; Almeida-Paes, R. Beyond domestic cats: Environmental detection of Sporothrix brasiliensis DNA in a hyperendemic area of sporotrichosis in Rio de Janeiro state, Brazil. J. Fungi 2022, 8, 604. [Google Scholar] [CrossRef] [PubMed]
- Rabello, V.B.S.; Almeida-Silva, F.; Scramignon-Costa, B.d.S.; Motta, B.d.S.; de Macedo, P.M.; Teixeira, M.d.M.; Almeida-Paes, R.; Irinyi, L.; Meyer, W.; Zancopé-Oliveira, R.M. Environmental isolation of Sporothrix brasiliensis in an area with recurrent feline sporotrichosis cases. Front. Cell Infect. Microbiol. 2022, 12, 894297. [Google Scholar] [CrossRef]
- Rodrigues, A.M.; de Hoog, G.S.; de Camargo, Z.P. Sporothrix species causing outbreaks in animals and humans driven by animal-animal transmission. PLoS Pathog. 2016, 12, e1005638. [Google Scholar] [CrossRef]
- Lopes-Bezerra, L.M.; Mora-Montes, H.M.; Zhang, Y.; Nino-Vega, G.; Rodrigues, A.M.; de Camargo, Z.P.; de Hoog, S. Sporotrichosis between 1898 and 2017: The evolution of knowledge on a changeable disease and on emerging etiological agents. Med. Mycol. 2018, 56, 126–143. [Google Scholar] [CrossRef]
- Lutz, A.; Splendore, A. On a mycosis observed in men and mice: Contribution to the knowledge of the so-called sporotrichosis. Rev. Médica São Paulo 1907, 21, 443–450. [Google Scholar]
- Rodrigues, A.M.; de Hoog, G.S.; de Camargo, Z.P. Feline Sporotrichosis. In Emerging and Epizootic Fungal Infections in Animals; Seyedmousavi, S., de Hoog, G.S., Guillot, J., Verweij, P.E., Eds.; Springer International Publishing: Cham, Switzerland, 2018; Volume 1, pp. 199–231. [Google Scholar]
- Bonifaz, A.; Vázquez-González, D. Diagnosis and treatment of lymphocutaneous sporotrichosis: What are the options? Curr. Fungal Infect. Rep. 2013, 7, 252–259. [Google Scholar] [CrossRef]
- De Oliveira Bento, A.; de Sena Costa, A.S.; Lima, S.L.; do Monte Alves, M.; de Azevedo Melo, A.S.; Rodrigues, A.M.; da Silva-Rocha, W.P.; Milan, E.P.; Chaves, G.M. The spread of cat-transmitted sporotrichosis due to Sporothrix brasiliensis in Brazil towards the Northeast region. PLoS Negl. Trop. Dis. 2021, 15, e0009693. [Google Scholar] [CrossRef] [PubMed]
- Do Monte Alves, M.; Pipolo Milan, E.; da Silva-Rocha, W.P.; Soares de Sena da Costa, A.; Araujo Maciel, B.; Cavalcante Vale, P.H.; de Albuquerque, P.R.; Lopes Lima, S.; Salles de Azevedo Melo, A.; Messias Rodrigues, A.; et al. Fatal pulmonary sporotrichosis caused by Sporothrix brasiliensis in Northeast Brazil. PLoS Negl. Trop. Dis. 2020, 14, e0008141. [Google Scholar] [CrossRef] [PubMed]
- Aung, A.K.; Teh, B.M.; McGrath, C.; Thompson, P.J. Pulmonary sporotrichosis: Case series and systematic analysis of literature on clinico-radiological patterns and management outcomes. Med. Mycol. 2013, 51, 534–544. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Orofino-Costa, R.; de Macedo, P.M.; Bernardes-Engemann, A.R. Hyperendemia of sporotrichosis in the Brazilian Southeast: Learning from clinics and therapeutics. Curr. Fungal Infect. Rep. 2015, 9, 220–228. [Google Scholar] [CrossRef]
- Silva-Vergara, M.L.; de Camargo, Z.P.; Silva, P.F.; Abdalla, M.R.; Sgarbieri, R.N.; Rodrigues, A.M.; dos Santos, K.C.; Barata, C.H.; Ferreira-Paim, K. Disseminated Sporothrix brasiliensis infection with endocardial and ocular involvement in an HIV-infected patient. Am. J. Trop. Med. Hyg. 2012, 86, 477–480. [Google Scholar] [CrossRef] [Green Version]
- Orofino-Costa, R.C.; Macedo, P.M.; Rodrigues, A.M.; Bernardes-Engemann, A.R. Sporotrichosis: An update on epidemiology, etiopathogenesis, laboratory and clinical therapeutics. An. Bras. Dermatol. 2017, 92, 606–620. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Paixao, A.G.; Galhardo, M.C.; Almeida-Paes, R.; Nunes, E.P.; Goncalves, M.L.; Chequer, G.L.; Lamas Cda, C. The difficult management of disseminated Sporothrix brasiliensis in a patient with advanced AIDS. AIDS Res. Ther. 2015, 12, 16. [Google Scholar] [CrossRef] [Green Version]
- Nepomuceno Araujo, M.; Nihei, C.H.; Rodrigues, A.M.; Higashino, H.; Ponzio, V.; Campos Pignatari, A.C.; Barcellos, M.A.; Braga, O.; Duayer, I.F. Case report: Invasive sinusitis due to Sporothrix brasiliensis in a renal transplant recipient. Am. J. Trop. Med. Hyg. 2021, 105, 1218–1221. [Google Scholar] [CrossRef]
- Rodrigues, A.M.; Bagagli, E.; de Camargo, Z.P.; Bosco, S.M.G. Sporothrix schenckii sensu stricto isolated from soil in an armadillo’s burrow. Mycopathologia 2014, 177, 199–206. [Google Scholar] [CrossRef]
- Almeida, F.; Sampaio, S.A.P.; Lacaz, C.S.; Fernandes, J.C. Statistical data on sporotrichosis. Analysis of 344 cases. An. Bras. Dermatol. 1955, 30, 9–12. [Google Scholar]
- Rediguieri, B.C.; da Cruz Bahiense, I.; de Carvalho, J.A.; Leite, G.R.; Falqueto, A.; Rodrigues, A.M.; Gonçalves, S.S. Clinical, epidemiological, and epizootic features of Sporothrix brasiliensis in Espírito Santo, Brazil. Ecohealth 2022, 19, 124–134. [Google Scholar] [CrossRef] [PubMed]
- Seyedmousavi, S.; Bosco, S.d.M.G.; de Hoog, S.; Ebel, F.; Elad, D.; Gomes, R.R.; Jacobsen, I.D.; Jensen, H.E.; Martel, A.; Mignon, B.; et al. Fungal infections in animals: A patchwork of different situations. Med. Mycol. 2018, 56, 165–187. [Google Scholar] [CrossRef]
- Gremião, I.D.; Miranda, L.H.; Reis, E.G.; Rodrigues, A.M.; Pereira, S.A. Zoonotic epidemic of sporotrichosis: Cat to human transmission. PLoS Pathog. 2017, 13, e1006077. [Google Scholar] [CrossRef] [PubMed]
- Montenegro, H.; Rodrigues, A.M.; Galvão Dias, M.A.; da Silva, E.A.; Bernardi, F.; Camargo, Z.P. Feline sporotrichosis due to Sporothrix brasiliensis: An emerging animal infection in São Paulo, Brazil. BMC Vet. Res. 2014, 10, 269. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Schubach, T.M.; Schubach, A.; Okamoto, T.; Pellon, I.V.; Fialho-Monteiro, P.C.; Reis, R.S.; Barros, M.B.; Andrade-Perez, M.; Wanke, B. Haematogenous spread of Sporothrix schenckii in cats with naturally acquired sporotrichosis. J. Small Anim. Pract. 2003, 44, 395–398. [Google Scholar] [CrossRef]
- Gremião, I.D.; Menezes, R.C.; Schubach, T.M.; Figueiredo, A.B.; Cavalcanti, M.C.; Pereira, S.A. Feline sporotrichosis: Epidemiological and clinical aspects. Med. Mycol. 2015, 53, 15–21. [Google Scholar] [CrossRef]
- Tellez, M.D.; Batista-Duharte, A.; Portuondo, D.; Quinello, C.; Bonne-Hernandez, R.; Carlos, I.Z. Sporothrix schenckii complex biology: Environment and fungal pathogenicity. Microbiology 2014, 160, 2352–2365. [Google Scholar] [CrossRef]
- Chakrabarti, A.; Bonifaz, A.; Gutierrez-Galhardo, M.C.; Mochizuki, T.; Li, S. Global epidemiology of sporotrichosis. Med. Mycol. 2015, 53, 3–14. [Google Scholar] [CrossRef] [Green Version]
- Macedo-Sales, P.A.; Souto, S.; Destefani, C.A.; Lucena, R.P.; Machado, R.L.D.; Pinto, M.R.; Rodrigues, A.M.; Lopes-Bezerra, L.M.; Rocha, E.M.S.; Baptista, A.R.S. Domestic feline contribution in the transmission of Sporothrix in Rio de Janeiro State, Brazil: A comparison between infected and non-infected populations. BMC Vet. Res. 2018, 14, 19. [Google Scholar] [CrossRef] [Green Version]
- De Souza, E.W.; Borba, C.M.; Pereira, S.A.; Gremiao, I.D.F.; Langohr, I.M.; Oliveira, M.M.E.; de Oliveira, R.V.C.; da Cunha, C.R.; Zancope-Oliveira, R.M.; de Miranda, L.H.M.; et al. Clinical features, fungal load, coinfections, histological skin changes, and itraconazole treatment response of cats with sporotrichosis caused by Sporothrix brasiliensis. Sci. Rep. 2018, 8, 9074. [Google Scholar] [CrossRef] [Green Version]
- Etchecopaz, A.; Toscanini, M.A.; Gisbert, A.; Mas, J.; Scarpa, M.; Iovannitti, C.A.; Bendezú, K.; Nusblat, A.D.; Iachini, R.; Cuestas, M.L. Sporothrix brasiliensis: A review of an emerging South American fungal pathogen, its related disease, presentation and spread in Argentina. J. Fungi 2021, 7, 170. [Google Scholar] [CrossRef] [PubMed]
- Etchecopaz, A.N.; Lanza, N.; Toscanini, M.A.; Devoto, T.B.; Pola, S.J.; Daneri, G.L.; Iovannitti, C.A.; Cuestas, M.L. Sporotrichosis caused by Sporothrix brasiliensis in Argentina: Case report, molecular identification and in vitro susceptibility pattern to antifungal drugs. J. Mycol. Med. 2019, 30, 100908. [Google Scholar] [CrossRef] [PubMed]
- García Duarte, J.M.; Wattiez Acosta, V.R.; Fornerón Viera, P.M.L.; Aldama Caballero, A.; Gorostiaga Matiauda, G.A.; Rivelli de Oddone, V.B.; Pereira Brunelli, J.G. Esporotricosis trasmitida por gato doméstico. Reporte de un caso familiar. Rev. Nac. 2017, 9, 67–76. [Google Scholar]
- Rios, M.E.; Suarez, J.M.D.; Moreno, J.; Vallee, J.; Moreno, J.P. Zoonotic sporotrichosis related to cat contact: First case report from Panama in Central America. Cureus 2018, 10, e2906. [Google Scholar] [CrossRef] [Green Version]
- PAHO. Sporothrix brasiliensis, an Emerging Fungal Pathogen, Notable for Its Zoonotic Transmission and Epidemic Potential for Human and Animal Health in the Americas. Available online: https://www.someve.com.ar/images/noticias/2019/S-brasiliensis_lasAmericas_30082019_ES.pdf (accessed on 30 August 2019).
- Rachman, R.; Ligaj, M.; Chinthapalli, S.; Serafino Wani, R. Zoonotic acquisition of cutaneous Sporothrix brasiliensis infection in the UK. BMJ Case Rep. 2022, 15, e248418. [Google Scholar] [CrossRef]
- Govender, N.P.; Maphanga, T.G.; Zulu, T.G.; Patel, J.; Walaza, S.; Jacobs, C.; Ebonwu, J.I.; Ntuli, S.; Naicker, S.D.; Thomas, J. An outbreak of lymphocutaneous sporotrichosis among mine-workers in South Africa. PLoS Negl. Trop. Dis. 2015, 9, e0004096. [Google Scholar] [CrossRef]
- New, D.; Beukers, A.G.; Kidd, S.E.; Merritt, A.J.; Weeks, K.; van Hal, S.J.; Arthur, I. Identification of multiple species and subpopulations among Australian clinical Sporothrix isolates using whole genome sequencing. Med. Mycol. 2019, 57, 905–908. [Google Scholar] [CrossRef] [PubMed]
- Madrid, H.; Cano, J.; Gene, J.; Bonifaz, A.; Toriello, C.; Guarro, J. Sporothrix globosa, a pathogenic fungus with widespread geographical distribution. Rev. Iberoam. Micol. 2009, 26, 218–222. [Google Scholar] [CrossRef] [Green Version]
- Makri, N.; Paterson, G.K.; Gregge, F.; Urquhart, C.; Nuttall, T. First case report of cutaneous sporotrichosis (Sporothrix species) in a cat in the UK. J. Feline Med. Surg. 2020, 6, 2055116920906001. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Ishida, K.; de Castro, R.A.; Borba Dos Santos, L.P.; Quintella, L.P.; Lopes-Bezerra, L.M.; Rozental, S. Amphotericin B, alone or followed by itraconazole therapy, is effective in the control of experimental disseminated sporotrichosis by Sporothrix brasiliensis. Med. Mycol. 2015, 53, 34–41. [Google Scholar] [CrossRef]
- Rodrigues, A.M.; de Hoog, G.S.; de Cassia Pires, D.; Brilhante, R.S.N.; da Costa Sidrim, J.J.; Gadelha, M.F.; Colombo, A.L.; de Camargo, Z.P. Genetic diversity and antifungal susceptibility profiles in causative agents of sporotrichosis. BMC Infect. Dis. 2014, 14, 219. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Fernandes, G.F.; dos Santos, P.O.; Rodrigues, A.M.; Sasaki, A.A.; Burger, E.; de Camargo, Z.P. Characterization of virulence profile, protein secretion and immunogenicity of different Sporothrix schenckii sensu stricto isolates compared with S. globosa and S. brasiliensis species. Virulence 2013, 4, 241–249. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Brilhante, R.S.; Rodrigues, A.M.; Sidrim, J.J.; Rocha, M.F.; Pereira, S.A.; Gremiao, I.D.; Schubach, T.M.; de Camargo, Z.P. In vitro susceptibility of antifungal drugs against Sporothrix brasiliensis recovered from cats with sporotrichosis in Brazil. Med. Mycol. 2016, 54, 275–279. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Della Terra, P.P.; Rodrigues, A.M.; Fernandes, G.F.; Nishikaku, A.S.; Burger, E.; de Camargo, Z.P. Exploring virulence and immunogenicity in the emerging pathogen Sporothrix brasiliensis. PLoS Negl. Trop. Dis. 2017, 11, e0005903. [Google Scholar] [CrossRef] [PubMed]
- De Oliveira, M.M.; de Almeida-Paes, R.; de Medeiros Muniz, M.; de Lima Barros, M.B.; Galhardo, M.C.; Zancope-Oliveira, R.M. Sporotrichosis caused by Sporothrix globosa in Rio De Janeiro, Brazil: Case report. Mycopathologia 2010, 169, 359–363. [Google Scholar] [CrossRef] [PubMed]
- Brilhante, R.S.N.; de Aguiar, F.R.M.; da Silva, M.L.Q.; de Oliveira, J.S.; de Camargo, Z.P.; Rodrigues, A.M.; Pereira, V.S.; Serpa, R.; Castelo-Branco, D.; Correia, E.E.M.; et al. Antifungal susceptibility of Sporothrix schenckii complex biofilms. Med. Mycol. 2018, 56, 297–306. [Google Scholar] [CrossRef] [PubMed]
- Brilhante, R.S.N.; Fernandes, M.R.; Pereira, V.S.; Costa, A.d.C.; Oliveira, J.S.d.; de Aguiar, L.; Rodrigues, A.M.; de Camargo, Z.P.; Pereira-Neto, W.A.; Sidrim, J.J.C.; et al. Biofilm formation on cat claws by Sporothrix species: An ex vivo model. Microb. Pathog. 2021, 150, 104670. [Google Scholar] [CrossRef] [PubMed]
- Espinel-Ingroff, A.; Abreu, D.P.B.; Almeida-Paes, R.; Brilhante, R.S.N.; Chakrabarti, A.; Chowdhary, A.; Hagen, F.; Cordoba, S.; Gonzalez, G.M.; Govender, N.P.; et al. Multicenter and international study of MIC/MEC distributions for definition of epidemiological cutoff values (ECVs) for species of Sporothrix identified by molecular methods. Antimicrob. Agents Chemother. 2017, 61, e01057-17. [Google Scholar] [CrossRef] [Green Version]
- Nava-Pérez, N.; Neri-García, L.G.; Romero-González, O.E.; Terrones-Cruz, J.A.; García-Carnero, L.C.; Mora-Montes, H.M. Biological and clinical attributes of Sporothrix globosa, a causative agent of sporotrichosis. Infect. Drug Resist. 2022, 15, 2067–2090. [Google Scholar] [CrossRef] [PubMed]
- García-Carnero, L.C.; Martínez-Álvarez, J.A. Virulence factors of Sporothrix schenckii. J. Fungi 2022, 8, 318. [Google Scholar] [CrossRef] [PubMed]
- Hernández-Castro, R.; Pinto-Almazán, R.; Arenas, R.; Sánchez-Cárdenas, C.D.; Espinosa-Hernández, V.M.; Sierra-Maeda, K.Y.; Conde-Cuevas, E.; Juárez-Durán, E.R.; Xicohtencatl-Cortes, J.; Carrillo-Casas, E.M.; et al. Epidemiology of clinical sporotrichosis in the Americas in the last ten years. J. Fungi 2022, 8, 588. [Google Scholar] [CrossRef] [PubMed]
- Gonsales, F.F.; Fernandes, N.C.C.A.; Mansho, W.; Montenegro, H.; Benites, N.R. Direct PCR of lesions suggestive of sporotrichosis in felines. Arq. Bras. Med. Vet. Zootec. 2020, 72, 2002–2006. [Google Scholar] [CrossRef]
- Barros, M.B.; de Almeida Paes, R.; Schubach, A.O. Sporothrix schenckii and sporotrichosis. Clin. Microbiol. Rev. 2011, 24, 633–654. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Kwon-Chung, J.K.; Bennett, J.E. Medical Mycology; Lea & Febiger: Philadelphia, PA, USA, 1992. [Google Scholar]
- Morris-Jones, R. Sporotrichosis. Clin. Exp. Dermatol. 2002, 27, 427–431. [Google Scholar] [CrossRef] [PubMed]
- Arenas, R.; Sanchez-Cardenas, C.D.; Ramirez-Hobak, L.; Ruiz Arriaga, L.F.; Vega Memije, M.E. Sporotrichosis: From KOH to molecular biology. J. Fungi 2018, 4, 62. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Camargo, Z.P. Immunofluorescence in Sporotrichosis; Federal University of São Paulo: São Paulo, Brazil, 1974. [Google Scholar]
- Silva, J.N.; Miranda, L.H.M.; Menezes, R.C.; Gremiao, I.D.F.; Oliveira, R.V.C.; Vieira, S.M.M.; Conceicao-Silva, F.; Ferreiro, L.; Pereira, S.A. Comparison of the sensitivity of three methods for the early diagnosis of sporotrichosis in cats. J. Comp. Pathol. 2018, 160, 72–78. [Google Scholar] [CrossRef] [PubMed]
- Gonsales, F.F.; Fernandes, N.; Mansho, W.; Montenegro, H.; Guerra, J.M.; de Araujo, L.J.T.; da Silva, S.M.P.; Benites, N.R. Feline Sporothrix spp. detection using cell blocks from brushings and fine-needle aspirates: Performance and comparisons with culture and histopathology. Vet. Clin. Pathol. 2019, 48, 143–147. [Google Scholar] [CrossRef] [PubMed]
- Brilhante, R.S.; Silva, N.F.; Lima, R.A.; Caetano, E.P.; Alencar, L.P.; Castelo-Branco Dde, S.; Moreira, J.L.; Bandeira, S.P.; Camargo, Z.P.; Rodrigues, A.M.; et al. Easy storage strategies for Sporothrix spp. strains. Biopreserv. Biobank. 2015, 13, 131–134. [Google Scholar] [CrossRef]
- Rodrigues, A.M.; Fernandes, G.F.; de Camargo, Z.P. Sporotrichosis. In Emerging and Re-Emerging Infectious Diseases of Livestock; Bayry, J., Ed.; Springer: Berlin/Heidelberg, Germany, 2017; pp. 391–421. [Google Scholar]
- Oliveira, M.M.; Almeida-Paes, R.; Muniz, M.M.; Gutierrez-Galhardo, M.C.; Zancope-Oliveira, R.M. Phenotypic and molecular identification of Sporothrix isolates from an epidemic area of sporotrichosis in Brazil. Mycopathologia 2011, 172, 257–267. [Google Scholar] [CrossRef]
- Camacho, E.; León-Navarro, I.; Rodríguez-Brito, S.; Mendoza, M.; Niño-Vega, G.A. Molecular epidemiology of human sporotrichosis in Venezuela reveals high frequency of Sporothrix globosa. BMC Infect. Dis. 2015, 15, 94. [Google Scholar] [CrossRef]
- Miranda, L.H.; Conceicao-Silva, F.; Quintella, L.P.; Kuraiem, B.P.; Pereira, S.A.; Schubach, T.M. Feline sporotrichosis: Histopathological profile of cutaneous lesions and their correlation with clinical presentation. Comp. Immunol. Microbiol. Infect. Dis. 2013, 36, 425–432. [Google Scholar] [CrossRef] [PubMed]
- Thompson, G.R., 3rd; Le, T.; Chindamporn, A.; Kauffman, C.A.; Alastruey-Izquierdo, A.; Ampel, N.M.; Andes, D.R.; Armstrong-James, D.; Ayanlowo, O.; Baddley, J.W.; et al. Global guideline for the diagnosis and management of the endemic mycoses: An initiative of the European Confederation of Medical Mycology in cooperation with the International Society for Human and Animal Mycology. Lancet Infect. Dis. 2021, 21, e364–e374. [Google Scholar] [CrossRef]
- Rodrigues, A.M.; Kubitschek-Barreira, P.H.; Fernandes, G.F.; de Almeida, S.R.; Lopes-Bezerra, L.M.; de Camargo, Z.P. Immunoproteomic analysis reveals a convergent humoral response signature in the Sporothrix schenckii complex. J. Proteom. 2015, 115, 8–22. [Google Scholar] [CrossRef] [PubMed]
- Rodrigues, A.M.; Fernandes, G.F.; Araujo, L.M.; Della Terra, P.P.; Dos Santos, P.O.; Pereira, S.A.; Schubach, T.M.; Burger, E.; Lopes-Bezerra, L.M.; de Camargo, Z.P. Proteomics-based characterization of the humoral immune response in sporotrichosis: Toward discovery of potential diagnostic and vaccine antigens. PLoS Negl. Trop. Dis. 2015, 9, e0004016. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Almeida-Paes, R.; Pimenta, M.A.; Monteiro, P.C.; Nosanchuk, J.D.; Zancope-Oliveira, R.M. Immunoglobulins G, M, and A against Sporothrix schenckii exoantigens in patients with sporotrichosis before and during treatment with itraconazole. Clin. Vaccine Immunol. 2007, 14, 1149–1157. [Google Scholar] [CrossRef] [Green Version]
- De Albornoz, M.B.; Villanueva, E.; de Torres, E.D. Application of immunoprecipitation techniques to the diagnosis of cutaneous and extracutaneous forms of sporotrichosis. Mycopathologia 1984, 85, 177–183. [Google Scholar] [CrossRef]
- Almeida-Paes, R.; Bailao, A.M.; Pizzini, C.V.; Reis, R.S.; Soares, C.M.; Peralta, J.M.; Gutierrez-Galhardo, M.C.; Zancope-Oliveira, R.M. Cell-free antigens of Sporothrix brasiliensis: Antigenic diversity and application in an immunoblot assay. Mycoses 2012, 55, 467–475. [Google Scholar] [CrossRef]
- Scott, E.N.; Muchmore, H.G. Immunoblot analysis of antibody responses to Sporothrix schenckii. J. Clin. Microbiol. 1989, 27, 300–304. [Google Scholar] [CrossRef] [Green Version]
- Fernandes, G.F.; Amaral, C.C.D.; Sasaki, A.; Godoy, P.M.; De Camargo, Z.P. Heterogeneity of proteins expressed by Brazilian Sporothrix schenckii isolates. Med. Mycol. 2009, 47, 855–861. [Google Scholar] [CrossRef] [Green Version]
- Blumer, S.O.; Kaufman, L.; Kaplan, W.; McLaughlin, D.W.; Kraft, D.E. Comparative evaluation of five serological methods for the diagnosis of sporotrichosis. Appl. Microbiol. 1973, 26, 4–8. [Google Scholar] [CrossRef]
- Bernardes-Engemann, A.R.; Orofino Costa, R.C.; Miguens, B.P.; Penha, C.V.L.; Neves, E.; Pereira, B.A.S.; Dias, C.M.P.; Mattos, M.; Gutierrez, M.C.; Schubach, A.; et al. Development of an enzyme-linked immunosorbent assay for the serodiagnosis of several clinical forms of sporotrichosis. Med. Mycol. 2005, 43, 487–493. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Almeida-Paes, R.; Pimenta, M.A.; Pizzini, C.V.; Monteiro, P.C.; Peralta, J.M.; Nosanchuk, J.D.; Zancope-Oliveira, R.M. Use of mycelial-phase Sporothrix schenckii exoantigens in an enzyme-linked immunosorbent assay for diagnosis of sporotrichosis by antibody detection. Clin. Vaccine Immunol. 2007, 14, 244–249. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Fernandes, G.F.; Lopes-Bezerra, L.M.; Bernardes-Engemann, A.R.; Schubach, T.M.; Dias, M.A.; Pereira, S.A.; de Camargo, Z.P. Serodiagnosis of sporotrichosis infection in cats by enzyme-linked immunosorbent assay using a specific antigen, SsCBF, and crude exoantigens. Vet. Microbiol. 2011, 147, 445–449. [Google Scholar] [CrossRef] [PubMed]
- Della Terra, P.P.; Gonsales, F.F.; de Carvalho, J.A.; Hagen, F.; Kano, R.; Bonifaz, A.; Camargo, Z.P.; Rodrigues, A.M. Development and evaluation of a multiplex qPCR assay for rapid diagnostics of emerging sporotrichosis. Transbound. Emerg. Dis. 2022, 69, e704–e716. [Google Scholar] [CrossRef] [PubMed]
- Lücking, R.; Aime, M.C.; Robbertse, B.; Miller, A.N.; Aoki, T.; Ariyawansa, H.A.; Cardinali, G.; Crous, P.W.; Druzhinina, I.S.; Geiser, D.M.; et al. Fungal taxonomy and sequence-based nomenclature. Nat. Microbiol. 2021, 6, 540–548. [Google Scholar] [CrossRef] [PubMed]
- Pinheiro, B.G.; Hahn, R.C.; Camargo, Z.P.; Rodrigues, A.M. Molecular tools for detection and identification of Paracoccidioides species: Current status and future perspectives. J. Fungi 2020, 6, 293. [Google Scholar] [CrossRef] [PubMed]
- Luchi, N.; Ioos, R.; Santini, A. Fast and reliable molecular methods to detect fungal pathogens in woody plants. Appl. Microbiol. Biotechnol. 2020, 104, 2453–2468. [Google Scholar] [CrossRef] [Green Version]
- Wickes, B.L.; Wiederhold, N.P. Molecular diagnostics in medical mycology. Nat. Commun. 2018, 9, 5135. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- White, P.L.; Alanio, A.; Brown, L.; Cruciani, M.; Hagen, F.; Gorton, R.; Lackner, M.; Millon, L.; Morton, C.O.; Rautemaa-Richardson, R.; et al. An overview of using fungal DNA for the diagnosis of invasive mycoses. Expert Rev. Mol. Diagn. 2022, 22, 169–184. [Google Scholar] [CrossRef]
- Sambrook, J.; Russell, D.W. Molecular Cloning: A Laboratory Manual; Cold Spring Harbor Laboratory: Cold Spring Harbor, NY, USA, 2001. [Google Scholar]
- White, T.J.; Bruns, T.; Lee, S.; Taylor, J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols: A Guide to Methods and Applications; Innis, M., Gelfand, D., Shinsky, J., White, T., Eds.; Academic Press: New York, NY, USA, 1990; pp. 315–322. [Google Scholar]
- Van Beers, E.H.; Joosse, S.A.; Ligtenberg, M.J.; Fles, R.; Hogervorst, F.B.L.; Verhoef, S.; Nederlof, P.M. A multiplex PCR predictor for aCGH success of FFPE samples. Br. J. Cancer 2006, 94, 333–337. [Google Scholar] [CrossRef] [Green Version]
- Dean, R.; Harley, R.; Helps, C.; Caney, S.; Gruffydd-Jones, T. Use of quantitative real-time PCR to monitor the response of Chlamydophila felis infection to doxycycline treatment. J. Clin. Microbiol. 2005, 43, 1858–1864. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Pahl, A.; Kuhlbrandt, U.; Brune, K.; Rollinghoff, M.; Gessner, A. Quantitative detection of Borrelia burgdorferi by real-time PCR. J. Clin. Microbiol. 1999, 37, 1958–1963. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Rodrigues, A.M.; de Hoog, G.S.; de Camargo, Z.P. Molecular diagnosis of pathogenic Sporothrix species. PLoS Negl. Trop. Dis. 2015, 9, e0004190. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Pinheiro, B.G.; Pôssa, A.P.; Della Terra, P.P.D.; de Carvalho, J.A.d.; Ricci, G.; Nishikaku, A.S.; Hahn, R.C.; Camargo, Z.P.d.; Rodrigues, A.M. A new duplex PCR-assay for the detection and identification of Paracoccidioides species. J. Fungi 2021, 7, 169. [Google Scholar] [CrossRef] [PubMed]
- Teles, F.; Seixas, J. The future of novel diagnostics in medical mycology. J. Med. Microbiol. 2015, 64, 315–322. [Google Scholar] [CrossRef] [Green Version]
- Van Stralen, K.J.; Stel, V.S.; Reitsma, J.B.; Dekker, F.W.; Zoccali, C.; Jager, K.J. Diagnostic methods I: Sensitivity, specificity, and other measures of accuracy. Kidney Int. 2009, 75, 1257–1263. [Google Scholar] [CrossRef] [Green Version]
- Burd, E.M. Validation of laboratory-developed molecular assays for infectious diseases. Clin. Microbiol. Rev. 2010, 23, 550–576. [Google Scholar] [CrossRef] [Green Version]
- Van Eck, N.J.; Waltman, L. VOS: A New Method for Visualizing Similarities Between Objects. In Advances in Data Analysis; Springer: Berlin/Heidelberg, Germany, 2007; pp. 299–306. [Google Scholar]
- De Carvalho, J.A.; Hagen, F.; Fisher, M.C.; de Camargo, Z.P.; Rodrigues, A.M. Genome-wide mapping using new AFLP markers to explore intraspecific variation among pathogenic Sporothrix species. PLoS Negl. Trop. Dis. 2020, 14, e0008330. [Google Scholar] [CrossRef]
- De Carvalho, J.A.; Pinheiro, B.G.; Hagen, F.; Goncalves, S.S.; Negroni, R.; Kano, R.; Bonifaz, A.; de Camargo, Z.P.; Rodrigues, A.M. A new duplex PCR assay for the rapid screening of mating-type idiomorphs of pathogenic Sporothrix species. Fungal Biol. 2021, 125, 834–843. [Google Scholar] [CrossRef]
- Rodrigues, A.M.; de Hoog, G.S.; Zhang, Y.; Camargo, Z.P. Emerging sporotrichosis is driven by clonal and recombinant Sporothrix species. Emerg. Microbes Infect. 2014, 3, e32. [Google Scholar] [CrossRef] [Green Version]
- Rodrigues, A.M.; Najafzadeh, M.J.; de Hoog, G.S.; de Camargo, Z.P. Rapid identification of emerging human-pathogenic Sporothrix species with rolling circle amplification. Front. Microbiol. 2015, 6, 1385. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Zhou, X.; Rodrigues, A.M.; Feng, P.; Hoog, G.S. Global ITS diversity in the Sporothrix schenckii complex. Fungal Divers. 2014, 66, 153–165. [Google Scholar] [CrossRef]
- Teixeira, M.M.; de Almeida, L.G.; Kubitschek-Barreira, P.; Alves, F.L.; Kioshima, E.S.; Abadio, A.K.; Fernandes, L.; Derengowski, L.S.; Ferreira, K.S.; Souza, R.C.; et al. Comparative genomics of the major fungal agents of human and animal Sporotrichosis: Sporothrix schenckii and Sporothrix brasiliensis. BMC Genom. 2014, 15, 943. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Zhang, M.; Li, F.; Gong, J.; Yang, X.; Zhang, J.; Zhao, F. Development and evaluation of a real-time polymerase chain reaction for fast diagnosis of sporotrichosis caused by Sporothrix globosa. Med. Mycol. 2020, 58, 61–65. [Google Scholar] [CrossRef] [PubMed]
- Zhang, M.; Li, F.; Li, R.; Gong, J.; Zhao, F. Fast diagnosis of sporotrichosis caused by Sporothrix globosa, Sporothrix schenckii, and Sporothrix brasiliensis based on multiplex real-time PCR. PLoS Negl. Trop. Dis. 2019, 13, e0007219. [Google Scholar] [CrossRef]
- Zhao, L.; Cui, Y.; Zhen, Y.; Yao, L.; Shi, Y.; Song, Y.; Chen, R.; Li, S. Genetic variation of Sporothrix globosa isolates from diverse geographic and clinical origins in China. Emerg. Microbes Infect. 2017, 6, e88. [Google Scholar] [CrossRef] [Green Version]
- Rudramurthy, S.M.; Shankarnarayan, S.A.; Hemashetter, B.M.; Verma, S.; Chauhan, S.; Nath, R.; Savio, J.; Capoor, M.; Kaur, H.; Ghosh, A.K.; et al. Phenotypic and molecular characterisation of Sporothrix globosa of diverse origin from India. Braz. J. Microbiol. 2021, 52, 91–100. [Google Scholar] [CrossRef]
- Gong, J.; Zhang, M.; Wang, Y.; Li, R.; He, L.; Wan, Z.; Li, F.; Zhang, J. Population structure and genetic diversity of Sporothrix globosa in China according to 10 novel microsatellite loci. J. Med. Microbiol. 2019, 68, 248–254. [Google Scholar] [CrossRef]
- Huang, L.; Gao, W.; Giosa, D.; Criseo, G.; Zhang, J.; He, T.; Huang, X.; Sun, J.; Sun, Y.; Huang, J.; et al. Whole-genome sequencing and in silico analysis of two strains of Sporothrix globosa. Genome Biol. Evol. 2016, 8, 3292–3296. [Google Scholar] [CrossRef] [Green Version]
- Oliveira, M.M.; Franco-Duarte, R.; Romeo, O.; Pais, C.; Criseo, G.; Sampaio, P.; Zancope-Oliveira, R.M. Evaluation of T3B fingerprinting for identification of clinical and environmental Sporothrix species. FEMS Microbiol. Lett. 2015, 362, fnv027. [Google Scholar] [CrossRef] [Green Version]
- De Oliveira, M.M.E.; Sampaio, P.; Almeida-Paes, R.; Pais, C.; Gutierrez-Galhardo, M.C.; Zancope-Oliveira, R.M. Rapid identification of Sporothrix species by T3B fingerprinting. J. Clin. Microbiol. 2012, 50, 2159–2162. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Ishizaki, H.; Kawasaki, M. Molecular epidemiology of Sporothrix schenckii. Nihon Ishinkin Gakkai Zasshi 2000, 41, 245–249. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Ishizaki, H.; Kawasaki, M.; Aoki, M.; Vismer, H.; Muir, D. Mitochondrial DNA analysis of Sporothrix schenckii in South Africa and Australia. Med. Mycol. 2000, 38, 433–436. [Google Scholar] [CrossRef] [PubMed]
- Kano, R.; Nakamura, Y.; Watanabe, S.; Tsujimoto, H.; Hasegawa, A. Identification of Sporothrix schenckii based on sequences of the chitin synthase 1 gene. Mycoses 2001, 44, 261–265. [Google Scholar] [CrossRef] [PubMed]
- Mesa-Arango, A.C.; del Rocío Reyes-Montes, M.; Pérez-Mejía, A.; Navarro-Barranco, H.; Souza, V.; Zúñiga, G.; Toriello, C. Phenotyping and genotyping of Sporothrix schenckii isolates according to geographic origin and clinical form of sporotrichosis. J. Clin. Microbiol. 2002, 40, 3004–3011. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- De Beer, Z.W.; Harrington, T.C.; Vismer, H.F.; Wingfield, B.D.; Wingfield, M.J. Phylogeny of the Ophiostoma stenoceras–Sporothrix schenckii complex. Mycologia 2003, 95, 434–441. [Google Scholar] [CrossRef] [PubMed]
- Hu, S.; Chung, W.-H.; Hung, S.-I.; Ho, H.-C.; Wang, Z.-W.; Chen, C.-H.; Lu, S.-C.; Kuo, T.-T.; Hong, H.-S. Detection of Sporothrix schenckii in clinical samples by a nested PCR assay. J. Clin. Microbiol. 2003, 41, 1414–1418. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Kano, R.; Matsuoka, A.; Kashima, M.; Nakamura, Y.; Watanabe, S.; Mizoguchi, M.; Hasegawa, A. Detection of Sporothrix schenckii chitin synthase 1 (CHS1) gene in biopsy specimens from human patients with sporotrichosis. J. Dermatol. Sci. 2003, 33, 73–74. [Google Scholar] [CrossRef]
- Liu, X.; Lian, C.; Jin, L.; An, L.; Yang, G.; Lin, X. Characterization of Sporothrix schenckii by random amplification of polymorphic DNA assay. Chin. Med. J. 2003, 116, 239–242. [Google Scholar]
- Ishizaki, H.; Kawasaki, M.; Aoki, M.; Wu, S.; Lin, J.; Kim, J.A.; Won, Y.H.; Calvo, C.R. Mitochondrial DNA analysis of Sporothrix schenckii from China, Korea and Spain. Nihon Ishinkin Gakkai Zasshi 2004, 45, 23–25. [Google Scholar] [CrossRef] [Green Version]
- Watanabe, S.; Kawasaki, M.; Mochizuki, T.; Ishizaki, H. RFLP Analysis of the Internal Transcribed Spacer regions of Sporothrix schenckii. Nihon Ishinkin Gakkai Zasshi 2004, 45, 165–175. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Kanbe, T.; Natsume, L.; Goto, I.; Kawasaki, M.; Mochizuki, T.; Ishizaki, H.; Kikuchi, A. Rapid and specific identification of Sporothrix schenckii by PCR targeting the DNA topoisomerase II gene. J. Dermatol. Sci. 2005, 38, 99–106. [Google Scholar] [CrossRef]
- Kano, R.; Watanabe, K.; Murakami, M.; Yanai, T.; Hasegawa, A. Molecular diagnosis of feline sporotrichosis. Vet. Rec. 2005, 156, 484–485. [Google Scholar] [CrossRef] [PubMed]
- Fernandes, G.F.; dos Santos, P.O.; Amaral, C.C.; Sasaki, A.A.; Godoy-Martinez, P.; Camargo, Z.P.d. Characteristics of 151 Brazilian Sporothrix schenckii isolates from 5 different geographic regions of Brazil: A forgotten and re-emergent pathogen. Open Mycol. J. 2009, 3, 48–58. [Google Scholar] [CrossRef]
- Rodrigues, A.M.; de Melo Teixeira, M.; de Hoog, G.S.; Schubach, T.M.P.; Pereira, S.A.; Fernandes, G.F.; Bezerra, L.M.L.; Felipe, M.S.; de Camargo, Z.P. Phylogenetic analysis reveals a high prevalence of Sporothrix brasiliensis in feline sporotrichosis outbreaks. PLoS Negl. Trop. Dis. 2013, 7, e2281. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Moussa, T.A.; Kadasa, N.M.; Al Zahrani, H.S.; Ahmed, S.A.; Feng, P.; Gerrits van den Ende, A.H.; Zhang, Y.; Kano, R.; Li, F.; Li, S.; et al. Origin and distribution of Sporothrix globosa causing sapronoses in Asia. J. Med. Microbiol. 2017, 66, 560–569. [Google Scholar] [CrossRef]
- Rojas, O.C.; Bonifaz, A.; Campos, C.; Trevino-Rangel, R.J.; Gonzalez-Alvarez, R.; Gonzalez, G.M. Molecular identification, antifungal susceptibility, and geographic origin of clinical strains of Sporothrix schenckii complex in Mexico. J. Fungi 2018, 4, 86. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Florez-Munoz, S.V.; Alzate, J.F.; Mesa-Arango, A.C. Molecular identification and antifungal susceptibility of clinical isolates of Sporothrix schenckii complex in Medellin, Colombia. Mycopathologia 2019, 184, 53–63. [Google Scholar] [CrossRef] [PubMed]
- Hayashi, S.; Kaminaga, T.; Baba, A.; Koike, S.; Koike, M.; Kanno, M.; Ishikawa, S.; Tsukada, K.; Suzuki, T.; Hamasaki, Y.; et al. Diagnostic value of a nested polymerase chain reaction for diagnosing cutaneous sporotrichosis from paraffin-embedded skin tissue. Mycoses 2019, 62, 1148–1153. [Google Scholar] [CrossRef]
- Wang, R.; Jing, H.; Chen, S.; Yang, Y.; Nan, H.; Chen, T. A patient with sporotrichosis diagnosed by molecular biology combined with traditional methods. J. Med. Cases 2019, 10, 284–287. [Google Scholar] [CrossRef]
- Eudes Filho, J.; Santos, I.B.D.; Reis, C.M.S.; Patané, J.S.L.; Paredes, V.; Bernardes, J.; Poggiani, S.; Castro, T.C.B.; Gomez, O.M.; Pereira, S.A.; et al. A novel Sporothrix brasiliensis genomic variant in Midwestern Brazil: Evidence for an older and wider sporotrichosis epidemic. Emerg. Microbes Infect. 2020, 9, 2515–2525. [Google Scholar] [CrossRef] [PubMed]
- Huang, M.; Ma, Z.; Zhou, X. Comparative genomic data provide new insight on the evolution of pathogenicity in Sporothrix species. Front. Microbiol. 2020, 11, 565439. [Google Scholar] [CrossRef]
- Ramírez-Soto, M.C.; Aguilar-Ancori, E.G.; Quispe-Ricalde, M.A.; Muñiz-Duran, J.G.; Quispe-Florez, M.M.; Chinen, A. Molecular identification of Sporothrix species in a hyperendemic area in Peru. J. Infect. Public. Health. 2021, 14, 670–673. [Google Scholar] [CrossRef]
- Da Cruz Bahiense Rocha, I.; Terra, P.P.D.; Cardoso de Oliveira, R.; Lubianca Zanotti, R.; Falqueto, A.; de Camargo, Z.P.; Rodrigues, A.M.; Goncalves, S.S. Molecular-based assessment of diversity and population structure of Sporothrix spp. clinical isolates from Espirito Santo-Brazil. Mycoses 2021, 64, 420–427. [Google Scholar] [CrossRef] [PubMed]
- De Carvalho, J.A.; Beale, M.A.; Hagen, F.; Fisher, M.C.; Kano, R.; Bonifaz, A.; Toriello, C.; Negroni, R.; Rego, R.S.M.; Gremiao, I.D.F.; et al. Trends in the molecular epidemiology and population genetics of emerging Sporothrix species. Stud. Mycol. 2021, 100, 100129. [Google Scholar] [CrossRef] [PubMed]
- Maschio-Lima, T.; Marques, M.D.R.; Lemes, T.H.; Brizzotti-Mazuchi, N.S.; Caetano, M.H.; de Almeida, B.G.; Bianco, L.M.; Monteiro, R.C.; Rodrigues, A.M.; de Camargo, Z.P.; et al. Clinical and epidemiological aspects of feline sporotrichosis caused by Sporothrix brasiliensis and in vitro antifungal susceptibility. Vet. Res. Commun. 2021, 45, 171–179. [Google Scholar] [CrossRef] [PubMed]
- Gibbs, R.A. DNA amplification by the polymerase chain reaction. Anal. Chem. 1990, 62, 1202–1214. [Google Scholar] [CrossRef]
- Yang, S.; Rothman, R.E. PCR-based diagnostics for infectious diseases: Uses, limitations, and future applications in acute-care settings. Lancet Infect. Dis. 2004, 4, 337–348. [Google Scholar] [CrossRef]
- Rodriguez-Brito, S.; Camacho, E.; Mendoza, M.; Nino-Vega, G.A. Differential identification of Sporothrix spp. and Leishmania spp. by conventional PCR and qPCR in multiplex format. Med. Mycol. 2015, 53, 22–27. [Google Scholar] [CrossRef] [Green Version]
- Rodrigues, A.M.; de Hoog, G.S.; Camargo, Z.P. Genotyping species of the Sporothrix schenckii complex by PCR-RFLP of calmodulin. Diagn. Microbiol. Infect. Dis. 2014, 78, 383–387. [Google Scholar] [CrossRef]
- Liu, X.; Zhang, Z.; Hou, B.; Wang, D.; Sun, T.; Li, F.; Wang, H.; Han, S. Rapid identification of Sporothrix schenckii in biopsy tissue by PCR. J. Eur. Acad. Dermatol. Venereol. 2013, 27, 1491–1497. [Google Scholar] [CrossRef]
- Xu, T.H.; Lin, J.P.; Gao, X.H.; Wei, H.; Liao, W.; Chen, H.D. Identification of Sporothix schenckii of various mtDNA types by nested PCR assay. Med. Mycol. 2010, 48, 161–165. [Google Scholar] [CrossRef] [Green Version]
- De Beer, Z.W.; Duong, T.A.; Wingfield, M.J. The divorce of Sporothrix and Ophiostoma: Solution to a problematic relationship. Stud. Mycol. 2016, 83, 165–191. [Google Scholar] [CrossRef] [Green Version]
- Estrada-Barcenas, D.A.; Vite-Garin, T.; Navarro-Barranco, H.; de la Torre-Arciniega, R.; Perez-Mejia, A.; Rodriguez-Arellanes, G.; Ramirez, J.A.; Humberto Sahaza, J.; Taylor, M.L.; Toriello, C. Genetic diversity of Histoplasma and Sporothrix complexes based on sequences of their ITS1-5.8S-ITS2 regions from the BOLD System. Rev. Iberoam. Micol. 2014, 31, 90–94. [Google Scholar] [CrossRef] [PubMed]
- Halliday, C.L.; Kidd, S.E.; Sorrell, T.C.; Chen, S.C. Molecular diagnostic methods for invasive fungal disease: The horizon draws nearer? Pathology 2015, 47, 257–269. [Google Scholar] [CrossRef]
- Petrucelli, M.F.; Abreu, M.H.; Cantelli, B.A.M.; Segura, G.G.; Nishimura, F.G.; Bitencourt, T.A.; Marins, M.; Fachin, A.L. Epidemiology and diagnostic perspectives of dermatophytoses. J. Fungi 2020, 6, 310. [Google Scholar] [CrossRef]
- Schoch, C.L.; Seifert, K.A.; Huhndorf, S.; Robert, V.; Spouge, J.L.; Levesque, C.A.; Chen, W.; Consortium, F.B. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proc. Natl. Acad. Sci. USA 2012, 109, 6241–6246. [Google Scholar] [CrossRef] [Green Version]
- Hebert, P.D.; Cywinska, A.; Ball, S.L.; deWaard, J.R. Biological identifications through DNA barcodes. Proc. Biol. Sci. 2003, 270, 313–321. [Google Scholar] [CrossRef] [Green Version]
- Meyer, C.P.; Paulay, G. DNA Barcoding: Error rates based on comprehensive sampling. PLoS Biol. 2005, 3, e422. [Google Scholar] [CrossRef] [Green Version]
- Berbee, M.L.; Taylor, J.W. 18S Ribosomal RNA gene sequence characters place the human pathogen Sporothrix schenckii in the genus Ophiostoma. Exp. Mycol. 1992, 16, 87–91. [Google Scholar] [CrossRef]
- Glaeser, S.P.; Kampfer, P. Multilocus sequence analysis (MLSA) in prokaryotic taxonomy. Syst. Appl. Microbiol. 2015, 38, 237–245. [Google Scholar] [CrossRef] [PubMed]
- Maiden, M.C.; Bygraves, J.A.; Feil, E.; Morelli, G.; Russell, J.E.; Urwin, R.; Zhang, Q.; Zhou, J.; Zurth, K.; Caugant, D.A.; et al. Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms. Proc. Natl. Acad. Sci. USA 1998, 95, 3140–3145. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Romeo, O.; Scordino, F.; Criseo, G. New insight into molecular phylogeny and epidemiology of Sporothrix schenckii species complex based on calmodulin-encoding gene analysis of Italian isolates. Mycopathologia 2011, 172, 179–186. [Google Scholar] [CrossRef] [PubMed]
- Marimon, R.; Gené, J.; Cano, J.; Guarro, J. Sporothrix luriei: A rare fungus from clinical origin. Med. Mycol. 2008, 46, 621–625. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Mullis, K.B.; Faloona, F.A. Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction. Methods Enzymol. 1987, 155, 335–350. [Google Scholar] [PubMed]
- Criseo, G.; Malara, G.; Romeo, O.; Puglisi Guerra, A. Lymphocutaneous sporotrichosis in an immunocompetent patient: A case report from extreme southern Italy. Mycopathologia 2008, 166, 159–162. [Google Scholar] [CrossRef]
- Luiz, R.L.F.; Menezes, R.C.; Pereira, S.A.; de Oliveira, R.d.V.C.; Oliveira, M.M.E. Nested PCR for the diagnosis of feline sporotrichosis from formalin-fixed and paraffin-embedded samples using different DNA extraction protocols. Front. Vet. Sci. 2022, 8, 755897. [Google Scholar] [CrossRef]
- Mendoza, M.; Brito, A.; Schaper, D.A.; Spooner, V.A.; Alvarado, P.; Castro, A.; Fernandez, A. Technical evaluation of nested PCR for the diagnosis of experimental sporotrichosis. Rev. Iberoam. Micol. 2012, 29, 120–125. [Google Scholar] [CrossRef] [PubMed]
- Fire, A.; Xu, S.Q. Rolling replication of short DNA circles. Proc. Natl. Acad. Sci. USA 1995, 92, 4641–4645. [Google Scholar] [CrossRef] [Green Version]
- Goo, N.-I.; Kim, D.-E. Rolling circle amplification as isothermal gene amplification in molecular diagnostics. BioChip J. 2016, 10, 262–271. [Google Scholar] [CrossRef]
- Bustin, S.A.; Benes, V.; Garson, J.A.; Hellemans, J.; Huggett, J.; Kubista, M.; Mueller, R.; Nolan, T.; Pfaffl, M.W.; Shipley, G.L.; et al. The MIQE guidelines: Minimum Information for publication of quantitative real-time PCR experiments. Clin. Chem. 2009, 55, 611–622. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Claydon, M.A.; Davey, S.N.; Edwards-Jones, V.; Gordon, D.B. The rapid identification of intact microorganisms using mass spectrometry. Nat. Biotechnol. 1996, 14, 1584–1586. [Google Scholar] [CrossRef] [PubMed]
- Murray, P.R. What is new in clinical microbiology-microbial identification by MALDI-TOF mass spectrometry: A paper from the 2011 William Beaumont Hospital Symposium on molecular pathology. J. Mol. Diagn. 2012, 14, 419–423. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Singhal, N.; Kumar, M.; Kanaujia, P.K.; Virdi, J.S. MALDI-TOF mass spectrometry: An emerging technology for microbial identification and diagnosis. Front. Microbiol. 2015, 6, 791. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Oliveira, M.M.; Santos, C.; Sampaio, P.; Romeo, O.; Almeida-Paes, R.; Pais, C.; Lima, N.; Zancope-Oliveira, R.M. Development and optimization of a new MALDI-TOF protocol for identification of the Sporothrix species complex. Res. Microbiol. 2015, 166, 102–110. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Botstein, D.; White, R.L.; Skolnick, M.; Davis, R.W. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. Hum. Genet. 1980, 32, 314–331. [Google Scholar]
- Ishizaki, H.; Kawasaki, M.; Aoki, M.; Matsumoto, T.; Padhye, A.A.; Mendoza, M.; Negroni, R. Mitochondrial DNA analysis of Sporothrix schenckii in North and South America. Mycopathologia 1998, 142, 115–118. [Google Scholar] [CrossRef]
- Suzuki, K.; Kawasaki, M.; Ishizaki, H. Analysis of restriction profiles of mitochondrial DNA from Sporothrix schenckii and related fungi. Mycopathologia 1988, 103, 147–151. [Google Scholar] [CrossRef]
- Takeda, Y.; Kawasaki, M.; Ishizaki, H. Phylogeny and molecular epidemiology of Sporothrix schenckii in Japan. Mycopathologia 1991, 116, 9–14. [Google Scholar] [CrossRef]
- Ishizaki, H.; Kawasaki, M.; Anzawa, K.; Mochizuki, T.; Chakrabarti, A.; Ungpakorn, R.; Torres Guererro, H.; Toriello, C.; Arenas, R. Mitochondrial DNA analysis of Sporothrix schenckii in India, Thailand, Brazil, Colombia, Guatemala and Mexico. Nihon Ishinkin Gakkai Zasshi 2009, 50, 19–26. [Google Scholar] [CrossRef] [Green Version]
- Kawasaki, M.; Anzawa, K.; Mochizuki, T.; Ishizaki, H. New strain typing method with Sporothrix schenckii using mitochondrial DNA and polymerase chain reaction restriction fragment length polymorphism (PCR–RFLP) technique. J. Dermatol. 2012, 39, 362–365. [Google Scholar] [CrossRef] [PubMed]
- Mochizuki, H.; Anzawa, K.; Mochizuki, T. Genotyping of intraspecies polymorphisms of Sporothrix globosa using partial sequence of mitochondrial DNA. J. Dermatol. 2022, 49, 263–271. [Google Scholar] [CrossRef] [PubMed]
- Wilson, A.M.; Wilken, P.M.; van der Nest, M.A.; Wingfield, M.J.; Wingfield, B.D. It’s all in the genes: The regulatory pathways of sexual reproduction in filamentous ascomycetes. Genes 2019, 10, 330. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Ferreira, A.V.; An, Z.; Metzenberg, R.L.; Glass, N.L. Characterization of mat A-2, mat A-3 and deltamatA mating-type mutants of Neurospora crassa. Genetics 1998, 148, 1069–1079. [Google Scholar] [CrossRef]
- Klix, V.; Nowrousian, M.; Ringelberg, C.; Loros, J.J.; Dunlap, J.C.; Pöggeler, S. Functional characterization of MAT1-1-specific mating-type genes in the homothallic ascomycete Sordaria macrospora provides new insights into essential and nonessential sexual regulators. Eukaryot. Cell 2010, 9, 894–905. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Kano, R.; Anzawa, K.; Mochizuki, T.; Nishimoto, K.; Hiruma, M.; Kamata, H.; Hasegawa, A. Sporothrix schenckii (sensu strict S. globosa) mating type 1-2 (MAT1-2) gene. J. Dermatol. 2013, 40, 726–730. [Google Scholar] [CrossRef]
- Kano, R.; Tsui, C.K.; Hamelin, R.C.; Anzawa, K.; Mochizuki, T.; Nishimoto, K.; Hiruma, M.; Kamata, H.; Hasegawa, A. The MAT1-1:MAT1-2 ratio of Sporothrix globosa isolates in Japan. Mycopathologia 2015, 179, 81–86. [Google Scholar] [CrossRef]
- Teixeira, M.d.M.; Rodrigues, A.M.; Tsui, C.K.M.; de Almeida, L.G.P.; Van Diepeningen, A.D.; Gerrits van den Ende, B.; Fernandes, G.F.; Kano, R.; Hamelin, R.C.; Lopes-Bezerra, L.M.; et al. Asexual propagation of a virulent clone complex in human and feline outbreak of sporotrichosis. Eukaryot. Cell 2015, 14, 158–169. [Google Scholar] [CrossRef] [Green Version]
- Kano, R.; Okubo, M.; Siew, H.H.; Kamata, H.; Hasegawa, A. Molecular typing of Sporothrix schenckii isolates from cats in Malaysia. Mycoses 2015, 58, 220–224. [Google Scholar] [CrossRef]
- De Araujo, M.L.; Rodrigues, A.M.; Fernandes, G.F.; de Camargo, Z.P.; de Hoog, G.S. Human sporotrichosis beyond the epidemic front reveals classical transmission types in Espírito Santo, Brazil. Mycoses 2015, 58, 485–490. [Google Scholar] [CrossRef]
- Valero, C.; Gago, S.; Monteiro, M.C.; Alastruey-Izquierdo, A.; Buitrago, M.J. African histoplasmosis: New clinical and microbiological insights. Med. Mycol. 2018, 56, 51–59. [Google Scholar] [CrossRef] [Green Version]
- Rodrigues, A.M.; Beale, M.A.; Hagen, F.; Fisher, M.C.; Terra, P.P.D.; de Hoog, S.; Brilhante, R.S.N.; de Aguiar Cordeiro, R.; de Souza Collares Maia Castelo-Branco, D.; Rocha, M.F.G.; et al. The global epidemiology of emerging Histoplasma species in recent years. Stud. Mycol. 2020, 97, 100095. [Google Scholar] [CrossRef] [PubMed]
- Vos, P.; Hogers, R.; Bleeker, M.; Reijans, M.; van de Lee, T.; Hornes, M.; Frijters, A.; Pot, J.; Peleman, J.; Kuiper, M.; et al. AFLP: A new technique for DNA fingerprinting. Nucleic Acids Res. 1995, 23, 4407–4414. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Roberto, T.N.; De Carvalho, J.A.; Beale, M.A.; Hagen, F.; Fisher, M.C.; Hahn, R.C.; de Camargo, Z.P.; Rodrigues, A.M. Exploring genetic diversity, population structure, and phylogeography in Paracoccidioides species using AFLP markers. Stud. Mycol. 2021, 100, 100131. [Google Scholar] [CrossRef] [PubMed]
- Al-Hatmi, A.M.; Hagen, F.; Menken, S.B.; Meis, J.F.; de Hoog, G.S. Global molecular epidemiology and genetic diversity of Fusarium, a significant emerging group of human opportunists from 1958 to 2015. Emerg. Microbes Infect. 2016, 5, e124. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Hagen, F.; Illnait-Zaragozí, M.-T.; Meis, J.F.; Chew, W.H.M.; Curfs-Breuker, I.; Mouton, J.W.; Hoepelman, A.I.M.; Spanjaard, L.; Verweij, P.E.; Kampinga, G.A.; et al. Extensive genetic diversity within the dutch clinical Cryptococcus neoformans population. J. Clin. Microbiol. 2012, 50, 1918. [Google Scholar] [CrossRef] [Green Version]
- Najafzadeh, M.J.; Sun, J.; Vicente, V.A.; Klaassen, C.H.; Bonifaz, A.; Gerrits van den Ende, A.H.; Menken, S.B.; de Hoog, G.S. Molecular epidemiology of Fonsecaea species. Emerg. Infect. Dis. 2011, 17, 464–469. [Google Scholar] [CrossRef]
- Restrepo, C.M.; Llanes, A.; Lleonart, R. Use of AFLP for the study of eukaryotic pathogens affecting humans. Infect. Genet. Evol. 2018, 63, 360–369. [Google Scholar] [CrossRef]
- Amiteye, S. Basic concepts and methodologies of DNA marker systems in plant molecular breeding. Heliyon 2021, 7, e08093. [Google Scholar] [CrossRef]
- Neyra, E.; Fonteyne, P.-A.; Swinne, D.; Fauche, F.; Bustamante, B.; Nolard, N. Epidemiology of human sporotrichosis investigated by Amplified Fragment Length Polymorphism. J. Clin. Microbiol. 2005, 43, 1348–1352. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Gomez, O.M.; Alvarez, L.C.; Muñoz, J.F.; Misas, E.; Gallo, J.E.; Jimenez, M.D.P.; Arango, M.; McEwen, J.G.; Hernandez, O.; Clay, O.K. Draft genome sequences of two Sporothrix schenckii clinical isolates associated with human sporotrichosis in Colombia. Genome Announc. 2018, 6, e00495-18. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- D’Alessandro, E.; Giosa, D.; Huang, L.; Zhang, J.; Gao, W.; Brankovics, B.; Oliveira, M.M.E.; Scordino, F.; Lo Passo, C.; Criseo, G.; et al. Draft genome sequence of the dimorphic fungus Sporothrix pallida, a nonpathogenic species belonging to Sporothrix, a genus containing agents of human and feline sporotrichosis. Genome Announc. 2016, 4, e00184-16. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Cuomo, C.A.; Rodriguez-Del Valle, N.; Perez-Sanchez, L.; Abouelleil, A.; Goldberg, J.; Young, S.; Zeng, Q.; Birren, B.W. Genome sequence of the pathogenic fungus Sporothrix schenckii (ATCC 58251). Genome Announc. 2014, 2, e00446-14. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Shang, Y.; Xiao, G.; Zheng, P.; Cen, K.; Zhan, S.; Wang, C. Divergent and convergent evolution of fungal pathogenicity. Genome Biol. Evol. 2016, 8, 1374–1387. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Rombauts, S.; Van De Peer, Y.; Rouze, P. AFLPinSilico, simulating AFLP fingerprints. Bioinformatics 2003, 19, 776–777. [Google Scholar] [CrossRef] [Green Version]
- Paris, M.; Bonnes, B.; Ficetola, G.F.; Poncet, B.N.; Després, L. Amplified fragment length homoplasy: In silico analysis for model and non-model species. BMC Genom. 2010, 11, 287. [Google Scholar] [CrossRef] [Green Version]
- Vuylsteke, M.; Peleman, J.D.; van Eijk, M.J.T. AFLP technology for DNA fingerprinting. Nat. Protoc. 2007, 2, 1387–1398. [Google Scholar] [CrossRef]
- Morgante, M.; Olivieri, A.M. PCR-amplified microsatellites as markers in plant genetics. Plant J. 1993, 3, 175–182. [Google Scholar] [CrossRef]
- Vieira, M.L.C.; Santini, L.; Diniz, A.L.; Munhoz, C.d.F. Microsatellite markers: What they mean and why they are so useful. Genet. Mol. Biol. 2016, 39, 312–328. [Google Scholar] [CrossRef] [Green Version]
- Oliveira, E.J.; Pádua, J.G.; Zucchi, M.I.; Vencovsky, R.; Vieira, M.L.C. Origin, evolution and genome distribution of microsatellites. Genet. Mol. Biol. 2006, 29, 294–307. [Google Scholar] [CrossRef]
- Mason, A.S. SSR genotyping. Methods Mol. Biol. 2015, 1245, 77–89. [Google Scholar] [CrossRef] [PubMed]
- Power, E.G.M. RAPD typing in microbiology—A technical review. J. Hosp. Infect. 1996, 34, 247–265. [Google Scholar] [CrossRef]
- Williams, J.G.; Kubelik, A.R.; Livak, K.J.; Rafalski, J.A.; Tingey, S.V. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 1990, 18, 6531–6535. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Reis, R.S.; Almeida-Paes, R.; Muniz Mde, M.; Tavares, P.M.; Monteiro, P.C.; Schubach, T.M.; Gutierrez-Galhardo, M.C.; Zancopé-Oliveira, R.M. Molecular characterisation of Sporothrix schenckii isolates from humans and cats involved in the sporotrichosis epidemic in Rio de Janeiro, Brazil. Mem. Inst. Oswaldo Cruz 2009, 104, 769–774. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Boechat, J.S.; Oliveira, M.M.E.; Almeida-Paes, R.; Gremiao, I.D.F.; Machado, A.C.S.; Oliveira, R.V.C.; Figueiredo, A.B.F.; Rabello, V.B.S.; Silva, K.B.L.; Zancope-Oliveira, R.M.; et al. Feline sporotrichosis: Associations between clinical-epidemiological profiles and phenotypic-genotypic characteristics of the etiological agents in the Rio de Janeiro epizootic area. Mem. Inst. Oswaldo Cruz 2018, 113, 185–196. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Schwartz, D.C.; Cantor, C.R. Separation of yeast chromosome-sized DNAs by pulsed field gradient gel electrophoresis. Cell 1984, 37, 67–75. [Google Scholar] [CrossRef]
- Beadle, J.; Wright, M.; McNeely, L.; Bennett, J.W. Electrophoretic karyotype analysis in fungi. Adv. Appl. Microbiol. 2003, 53, 243–270. [Google Scholar] [CrossRef]
- Mills, D.; McCluskey, K. Electrophoretic karyotypes of fungi: The new cytology. Mol. Plant-Microbe Interact. 1990, 3, 351–357. [Google Scholar] [CrossRef]
- Tateishi, T.; Murayama, S.Y.; Otsuka, F.; Yamaguchi, H. Karyotyping by PFGE of clinical isolates of Sporothrix schenckii. FEMS Immunol. Med. Microbiol. 1996, 13, 147–154. [Google Scholar] [CrossRef]
- O’Reilly, L.C.; Altman, S.A. Macrorestriction analysis of clinical and environmental isolates of Sporothrix schenckii. J. Clin. Microbiol. 2006, 44, 2547–2552. [Google Scholar] [CrossRef] [Green Version]
- Sasaki, A.A.; Fernandes, G.F.; Rodrigues, A.M.; Lima, F.M.; Marini, M.M.; dos S. Feitosa, L.; de Melo Teixeira, M.; Felipe, M.S.S.; da Silveira, J.F.; de Camargo, Z.P. Chromosomal polymorphism in the Sporothrix schenckii complex. PLoS ONE 2014, 9, e86819. [Google Scholar] [CrossRef]
- Sanger, F.; Nicklen, S.; Coulson, A.R. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 1977, 74, 5463–5467. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Shendure, J.; Balasubramanian, S.; Church, G.M.; Gilbert, W.; Rogers, J.; Schloss, J.A.; Waterston, R.H. DNA sequencing at 40: Past, present and future. Nature 2017, 550, 345–353. [Google Scholar] [CrossRef] [PubMed]
- Mardis, E.R. Next-generation sequencing platforms. Annu. Rev. Anal. Chem. 2013, 6, 287–303. [Google Scholar] [CrossRef] [Green Version]
- Petersen Lauren, M.; Martin Isabella, W.; Moschetti Wayne, E.; Kershaw Colleen, M.; Tsongalis Gregory, J.; Kraft Colleen, S. Third-generation sequencing in the clinical laboratory: Exploring the advantages and challenges of Nanopore sequencing. J. Clin. Microbiol. 2019, 58, e01315–e01319. [Google Scholar] [CrossRef] [PubMed]
- Bleidorn, C. Third generation sequencing: Technology and its potential impact on evolutionary biodiversity research. System. Biodivers. 2016, 14, 1–8. [Google Scholar] [CrossRef]
- Van Dijk, E.L.; Auger, H.; Jaszczyszyn, Y.; Thermes, C. Ten years of next-generation sequencing technology. Trends Genet. 2014, 30, 418–426. [Google Scholar] [CrossRef]
- Bruger, E.L.; Marx, C.J. A decade of genome sequencing has revolutionized studies of experimental evolution. Curr. Opin. Microbiol. 2018, 45, 149–155. [Google Scholar] [CrossRef]
- Rangel-Gamboa, L.; Martinez-Hernandez, F.; Maravilla, P.; Arenas-Guzman, R.; Flisser, A. Update of phylogenetic and genetic diversity of Sporothrix schenckii sensu lato. Med. Mycol. 2016, 54, 248–255. [Google Scholar] [CrossRef] [Green Version]
- Slater, G.S.; Birney, E. Automated generation of heuristics for biological sequence comparison. BMC Bioinform. 2005, 6, 31. [Google Scholar] [CrossRef] [Green Version]
- Rodrigues, A.M.; Gonçalves, S.S.; de Carvalho, J.A.; Borba-Santos, L.P.; Rozental, S.; de Camargo, Z.P. Current progress on epidemiology, diagnosis, and treatment of sporotrichosis and their future trends. J. Fungi 2022, 8, 776. [Google Scholar] [CrossRef] [PubMed]
- Rodrigues, A.M.; Orofino-Costa, R.; de Camargo, Z.P. Sporothrix spp. In Pocket Guide to Mycological Diagnosis, 1st ed.; Cordeiro Rde, A., Ed.; CRC Press: Boca Raton, FL, USA, 2019; pp. 99–113. [Google Scholar]
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de Carvalho, J.A.; Monteiro, R.C.; Hagen, F.; Camargo, Z.P.d.; Rodrigues, A.M. Trends in Molecular Diagnostics and Genotyping Tools Applied for Emerging Sporothrix Species. J. Fungi 2022, 8, 809. https://0-doi-org.brum.beds.ac.uk/10.3390/jof8080809
de Carvalho JA, Monteiro RC, Hagen F, Camargo ZPd, Rodrigues AM. Trends in Molecular Diagnostics and Genotyping Tools Applied for Emerging Sporothrix Species. Journal of Fungi. 2022; 8(8):809. https://0-doi-org.brum.beds.ac.uk/10.3390/jof8080809
Chicago/Turabian Stylede Carvalho, Jamile Ambrósio, Ruan Campos Monteiro, Ferry Hagen, Zoilo Pires de Camargo, and Anderson Messias Rodrigues. 2022. "Trends in Molecular Diagnostics and Genotyping Tools Applied for Emerging Sporothrix Species" Journal of Fungi 8, no. 8: 809. https://0-doi-org.brum.beds.ac.uk/10.3390/jof8080809